Tsoka S - Search Results

1

Detection of composite communities in multiplex biological networks.

Bennett L, Kittas A, Muirhead G, Papageorgiou LG, Tsoka S. Bennett L, et al. Among authors: tsoka s. Sci Rep. 2015 May 27;5:10345. doi: 10.1038/srep10345. Sci Rep. 2015. PMID: 26012716 Free PMC article.

2

Robustness of the p53 network and biological hackers.

Dartnell L, Simeonidis E, Hubank M, Tsoka S, Bogle ID, Papageorgiou LG. Dartnell L, et al. Among authors: tsoka s. FEBS Lett. 2005 Jun 6;579(14):3037-42. doi: 10.1016/j.febslet.2005.03.101. FEBS Lett. 2005. PMID: 15896791 Free article.

3

MINLP models for the synthesis of optimal peptide tags and downstream protein processing.

Simeonidis E, Pinto JM, Lienqueo ME, Tsoka S, Papageorgiou LG. Simeonidis E, et al. Among authors: tsoka s. Biotechnol Prog. 2005 May-Jun;21(3):875-84. doi: 10.1021/bp049650n. Biotechnol Prog. 2005. PMID: 15932268

4

Module detection in complex networks using integer optimisation.

Xu G, Bennett L, Papageorgiou LG, Tsoka S. Xu G, et al. Among authors: tsoka s. Algorithms Mol Biol. 2010 Nov 12;5:36. doi: 10.1186/1748-7188-5-36. Algorithms Mol Biol. 2010. PMID: 21073720 Free PMC article.

5

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum.

Lysenko A, Urban M, Bennett L, Tsoka S, Janowska-Sejda E, Rawlings CJ, Hammond-Kosack KE, Saqi M. Lysenko A, et al. Among authors: tsoka s. PLoS One. 2013 Jul 4;8(7):e67926. doi: 10.1371/journal.pone.0067926. Print 2013. PLoS One. 2013. PMID: 23861834 Free PMC article.

6

DyCoNet: a Gephi plugin for community detection in dynamic complex networks.

Kauffman J, Kittas A, Bennett L, Tsoka S. Kauffman J, et al. Among authors: tsoka s. PLoS One. 2014 Jul 7;9(7):e101357. doi: 10.1371/journal.pone.0101357. eCollection 2014. PLoS One. 2014. PMID: 25000497 Free PMC article.

7

Pathway-level disease data mining through hyper-box principles.

Yang L, Ainali C, Kittas A, Nestle FO, Papageorgiou LG, Tsoka S. Yang L, et al. Among authors: tsoka s. Math Biosci. 2015 Feb;260:25-34. doi: 10.1016/j.mbs.2014.09.005. Epub 2014 Sep 19. Math Biosci. 2015. PMID: 25242610

8

Community structure detection for overlapping modules through mathematical programming in protein interaction networks.

Bennett L, Kittas A, Liu S, Papageorgiou LG, Tsoka S. Bennett L, et al. Among authors: tsoka s. PLoS One. 2014 Nov 20;9(11):e112821. doi: 10.1371/journal.pone.0112821. eCollection 2014. PLoS One. 2014. PMID: 25412367 Free PMC article.

9

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework.

Yang L, Ainali C, Tsoka S, Papageorgiou LG. Yang L, et al. Among authors: tsoka s. BMC Bioinformatics. 2014 Dec 5;15(1):390. doi: 10.1186/s12859-014-0390-2. BMC Bioinformatics. 2014. PMID: 25475756 Free PMC article.

10

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.

Kittas A, Barozet A, Sereshti J, Grabe N, Tsoka S. Kittas A, et al. Among authors: tsoka s. BMC Syst Biol. 2015 Jul 11;9:34. doi: 10.1186/s12918-015-0179-6. BMC Syst Biol. 2015. PMID: 26163265 Free PMC article.

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