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In Silico HLA Typing Using Standard RNA-Seq Sequence Reads.
Boegel S, Scholtalbers J, Löwer M, Sahin U, Castle JC. Boegel S, et al. Among authors: sahin u. Methods Mol Biol. 2015;1310:247-58. doi: 10.1007/978-1-4939-2690-9_20. Methods Mol Biol. 2015. PMID: 26024640
rapmad: Robust analysis of peptide microarray data.
Renard BY, Löwer M, Kühne Y, Reimer U, Rothermel A, Türeci O, Castle JC, Sahin U. Renard BY, et al. Among authors: sahin u. BMC Bioinformatics. 2011 Aug 4;12:324. doi: 10.1186/1471-2105-12-324. BMC Bioinformatics. 2011. PMID: 21816082 Free PMC article.
Exploiting the mutanome for tumor vaccination.
Castle JC, Kreiter S, Diekmann J, Löwer M, van de Roemer N, de Graaf J, Selmi A, Diken M, Boegel S, Paret C, Koslowski M, Kuhn AN, Britten CM, Huber C, Türeci O, Sahin U. Castle JC, et al. Among authors: sahin u. Cancer Res. 2012 Mar 1;72(5):1081-91. doi: 10.1158/0008-5472.CAN-11-3722. Epub 2012 Jan 11. Cancer Res. 2012. PMID: 22237626 Free article.
Confidence-based somatic mutation evaluation and prioritization.
Löwer M, Renard BY, de Graaf J, Wagner M, Paret C, Kneip C, Türeci O, Diken M, Britten C, Kreiter S, Koslowski M, Castle JC, Sahin U. Löwer M, et al. Among authors: sahin u. PLoS Comput Biol. 2012;8(9):e1002714. doi: 10.1371/journal.pcbi.1002714. Epub 2012 Sep 27. PLoS Comput Biol. 2012. PMID: 23028300 Free PMC article.
HLA typing from RNA-Seq sequence reads.
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U. Boegel S, et al. Among authors: sahin u. Genome Med. 2012 Dec 22;4(12):102. doi: 10.1186/gm403. eCollection 2012. Genome Med. 2012. PMID: 23259685 Free PMC article.
Galaxy LIMS for next-generation sequencing.
Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U. Scholtalbers J, et al. Among authors: sahin u. Bioinformatics. 2013 May 1;29(9):1233-4. doi: 10.1093/bioinformatics/btt115. Epub 2013 Mar 11. Bioinformatics. 2013. PMID: 23479349
509 results