Di Palma F - Search Results

1

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations.

Di Palma F, Bottaro S, Bussi G. Di Palma F, et al. BMC Bioinformatics. 2015;16 Suppl 9(Suppl 9):S6. doi: 10.1186/1471-2105-16-S9-S6. Epub 2015 Jun 1. BMC Bioinformatics. 2015. PMID: 26051557 Free PMC article.

2

Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch.

Di Palma F, Colizzi F, Bussi G. Di Palma F, et al. RNA. 2013 Nov;19(11):1517-24. doi: 10.1261/rna.040493.113. Epub 2013 Sep 19. RNA. 2013. PMID: 24051105 Free PMC article.

3

The role of nucleobase interactions in RNA structure and dynamics.

Bottaro S, Di Palma F, Bussi G. Bottaro S, et al. Among authors: di palma f. Nucleic Acids Res. 2014 Dec 1;42(21):13306-14. doi: 10.1093/nar/gku972. Epub 2014 Oct 29. Nucleic Acids Res. 2014. PMID: 25355509 Free PMC article.

4

Using reweighted pulling simulations to characterize conformational changes in riboswitches.

Di Palma F, Colizzi F, Bussi G. Di Palma F, et al. Methods Enzymol. 2015;553:139-62. doi: 10.1016/bs.mie.2014.10.055. Epub 2015 Feb 3. Methods Enzymol. 2015. PMID: 25726464

5

Probing Interplays between Human XBP1u Translational Arrest Peptide and 80S Ribosome.

Di Palma F, Decherchi S, Pardo-Avila F, Succi S, Levitt M, von Heijne G, Cavalli A. Di Palma F, et al. J Chem Theory Comput. 2022 Mar 8;18(3):1905-1914. doi: 10.1021/acs.jctc.1c00796. Epub 2021 Dec 9. J Chem Theory Comput. 2022. PMID: 34881571 Free PMC article.

6

Dynamics behind affinity maturation of an anti-HCMV antibody family influencing antigen binding.

Di Palma F, Tramontano A. Di Palma F, et al. FEBS Lett. 2017 Sep;591(18):2936-2950. doi: 10.1002/1873-3468.12774. Epub 2017 Aug 30. FEBS Lett. 2017. PMID: 28771696 Free article.

7

Relevance of Ebola virus VP35 homo-dimerization on the type I interferon cascade inhibition.

Di Palma F, Daino GL, Ramaswamy VK, Corona A, Frau A, Fanunza E, Vargiu AV, Tramontano E, Ruggerone P. Di Palma F, et al. Antivir Chem Chemother. 2019 Jan-Dec;27:2040206619889220. doi: 10.1177/2040206619889220. Antivir Chem Chemother. 2019. PMID: 31744306 Free PMC article.

8

Insights into the homo-oligomerization properties of N-terminal coiled-coil domain of Ebola virus VP35 protein.

Ramaswamy VK, Di Palma F, Vargiu AV, Corona A, Piano D, Ruggerone P, Zinzula L, Tramontano E. Ramaswamy VK, et al. Among authors: di palma f. Virus Res. 2018 Mar 2;247:61-70. doi: 10.1016/j.virusres.2018.02.003. Epub 2018 Feb 7. Virus Res. 2018. PMID: 29427597

9

Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport.

Falconi M, Oteri F, Di Palma F, Pandey S, Battistoni A, Desideri A. Falconi M, et al. Among authors: di palma f. J Comput Aided Mol Des. 2011 Feb;25(2):181-94. doi: 10.1007/s10822-010-9409-6. Epub 2011 Jan 15. J Comput Aided Mol Des. 2011. PMID: 21240623

10

Tunneling nanotubes between bone marrow stromal cells support transmitophagy and resistance to apoptosis in myeloma.

Solimando AG, Di Palma F, Desantis V, Vacca A, Svelto M, Pisani F. Solimando AG, et al. Among authors: di palma f. Blood Cancer J. 2025 Jan 9;15(1):3. doi: 10.1038/s41408-025-01210-2. Blood Cancer J. 2025. PMID: 39788948 Free PMC article. No abstract available.

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