Fiston-Lavier AS - Search Results

1

A call for benchmarking transposable element annotation methods.

Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M. Hoen DR, et al. Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015. Mob DNA. 2015. PMID: 26244060 Free PMC article.

2

A model of segmental duplication formation in Drosophila melanogaster.

Fiston-Lavier AS, Anxolabehere D, Quesneville H. Fiston-Lavier AS, et al. Genome Res. 2007 Oct;17(10):1458-70. doi: 10.1101/gr.6208307. Epub 2007 Aug 28. Genome Res. 2007. PMID: 17726166 Free PMC article.

3

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Rech GE, et al. PLoS Genet. 2019 Feb 12;15(2):e1007900. doi: 10.1371/journal.pgen.1007900. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30753202 Free PMC article.

4

T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data.

Bogaerts-Márquez M, Barrón MG, Fiston-Lavier AS, Vendrell-Mir P, Castanera R, Casacuberta JM, González J. Bogaerts-Márquez M, et al. Among authors: fiston lavier as. Bioinformatics. 2020 Feb 15;36(4):1191-1197. doi: 10.1093/bioinformatics/btz727. Bioinformatics. 2020. PMID: 31580402 Free PMC article.

5

Impact of transposable elements on insect genomes and biology.

Maumus F, Fiston-Lavier AS, Quesneville H. Maumus F, et al. Curr Opin Insect Sci. 2015 Feb;7:30-36. doi: 10.1016/j.cois.2015.01.001. Epub 2015 Feb 3. Curr Opin Insect Sci. 2015. PMID: 32846669 Review. No abstract available.

6

Formation of plant metabolic gene clusters within dynamic chromosomal regions.

Field B, Fiston-Lavier AS, Kemen A, Geisler K, Quesneville H, Osbourn AE. Field B, et al. Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):16116-21. doi: 10.1073/pnas.1109273108. Epub 2011 Aug 29. Proc Natl Acad Sci U S A. 2011. PMID: 21876149 Free PMC article.

7

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.

Fiston-Lavier AS, Barrón MG, Petrov DA, González J. Fiston-Lavier AS, et al. Nucleic Acids Res. 2015 Feb 27;43(4):e22. doi: 10.1093/nar/gku1250. Epub 2014 Dec 15. Nucleic Acids Res. 2015. PMID: 25510498 Free PMC article.

8

Population genomics of transposable elements in Drosophila melanogaster.

Petrov DA, Fiston-Lavier AS, Lipatov M, Lenkov K, González J. Petrov DA, et al. Mol Biol Evol. 2011 May;28(5):1633-44. doi: 10.1093/molbev/msq337. Epub 2010 Dec 16. Mol Biol Evol. 2011. PMID: 21172826 Free PMC article.

9

TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.

Mohamed M, Sabot F, Varoqui M, Mugat B, Audouin K, Pélisson A, Fiston-Lavier AS, Chambeyron S. Mohamed M, et al. Among authors: fiston lavier as. Genome Biol. 2023 Apr 3;24(1):63. doi: 10.1186/s13059-023-02911-2. Genome Biol. 2023. PMID: 37013657 Free PMC article.

10

Population genomics of transposable elements in Drosophila.

Barrón MG, Fiston-Lavier AS, Petrov DA, González J. Barrón MG, et al. Annu Rev Genet. 2014;48:561-81. doi: 10.1146/annurev-genet-120213-092359. Epub 2014 Oct 1. Annu Rev Genet. 2014. PMID: 25292358 Review.

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