Shoaie S - Search Results

1

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

Shoaie S, Ghaffari P, Kovatcheva-Datchary P, Mardinoglu A, Sen P, Pujos-Guillot E, de Wouters T, Juste C, Rizkalla S, Chilloux J, Hoyles L, Nicholson JK; MICRO-Obes Consortium; Dore J, Dumas ME, Clement K, Bäckhed F, Nielsen J. Shoaie S, et al. Cell Metab. 2015 Aug 4;22(2):320-31. doi: 10.1016/j.cmet.2015.07.001. Cell Metab. 2015. PMID: 26244934 Free article.

2

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials.

Caspeta L, Shoaie S, Agren R, Nookaew I, Nielsen J. Caspeta L, et al. Among authors: shoaie s. BMC Syst Biol. 2012 Apr 4;6:24. doi: 10.1186/1752-0509-6-24. BMC Syst Biol. 2012. PMID: 22472172 Free PMC article.

3

Dynamic 13C-labeling experiments prove important differences in protein turnover rate between two Saccharomyces cerevisiae strains.

Hong KK, Hou J, Shoaie S, Nielsen J, Bordel S. Hong KK, et al. Among authors: shoaie s. FEMS Yeast Res. 2012 Nov;12(7):741-7. doi: 10.1111/j.1567-1364.2012.00823.x. Epub 2012 Jul 20. FEMS Yeast Res. 2012. PMID: 22716310

4

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum.

Agren R, Liu L, Shoaie S, Vongsangnak W, Nookaew I, Nielsen J. Agren R, et al. Among authors: shoaie s. PLoS Comput Biol. 2013;9(3):e1002980. doi: 10.1371/journal.pcbi.1002980. Epub 2013 Mar 21. PLoS Comput Biol. 2013. PMID: 23555215 Free PMC article.

5

Understanding the interactions between bacteria in the human gut through metabolic modeling.

Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J. Shoaie S, et al. Sci Rep. 2013;3:2532. doi: 10.1038/srep02532. Sci Rep. 2013. PMID: 23982459 Free PMC article.

6

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.

El-Semman IE, Karlsson FH, Shoaie S, Nookaew I, Soliman TH, Nielsen J. El-Semman IE, et al. Among authors: shoaie s. BMC Syst Biol. 2014 Apr 3;8:41. doi: 10.1186/1752-0509-8-41. BMC Syst Biol. 2014. PMID: 24708835 Free PMC article.

7

Elucidating the interactions between the human gut microbiota and its host through metabolic modeling.

Shoaie S, Nielsen J. Shoaie S, et al. Front Genet. 2014 Apr 22;5:86. doi: 10.3389/fgene.2014.00086. eCollection 2014. Front Genet. 2014. PMID: 24795748 Free PMC article. Review.

8

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling.

Ghaffari P, Mardinoglu A, Asplund A, Shoaie S, Kampf C, Uhlen M, Nielsen J. Ghaffari P, et al. Among authors: shoaie s. Sci Rep. 2015 Feb 2;5:8183. doi: 10.1038/srep08183. Sci Rep. 2015. PMID: 25640694 Free PMC article.

9

The gut microbiota modulates host amino acid and glutathione metabolism in mice.

Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckhed F, Nielsen J. Mardinoglu A, et al. Among authors: shoaie s. Mol Syst Biol. 2015 Oct 16;11(10):834. doi: 10.15252/msb.20156487. Mol Syst Biol. 2015. PMID: 26475342 Free PMC article.

10

Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism.

Elsemman IE, Mardinoglu A, Shoaie S, Soliman TH, Nielsen J. Elsemman IE, et al. Among authors: shoaie s. Mol Biosyst. 2016 Apr 26;12(5):1496-506. doi: 10.1039/c5mb00827a. Mol Biosyst. 2016. PMID: 27040643

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