Robinson-Rechavi M - Search Results

1

Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions.

Laurent S, Robinson-Rechavi M, Salamin N. Laurent S, et al. BMC Evol Biol. 2015 Aug 11;15:157. doi: 10.1186/s12862-015-0432-z. BMC Evol Biol. 2015. PMID: 26260305 Free PMC article.

2

How confident can we be that orthologs are similar, but paralogs differ?

Studer RA, Robinson-Rechavi M. Studer RA, et al. Trends Genet. 2009 May;25(5):210-6. doi: 10.1016/j.tig.2009.03.004. Epub 2009 Apr 14. Trends Genet. 2009. PMID: 19368988 Free article.

3

gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution.

Moretti S, Murri R, Maffioletti S, Kuzniar A, Castella B, Salamin N, Robinson-Rechavi M, Stockinger H. Moretti S, et al. Stud Health Technol Inform. 2012;175:59-68. Stud Health Technol Inform. 2012. PMID: 22941988

4

The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC.

Gharib WH, Robinson-Rechavi M. Gharib WH, et al. Mol Biol Evol. 2013 Jul;30(7):1675-86. doi: 10.1093/molbev/mst062. Epub 2013 Apr 4. Mol Biol Evol. 2013. PMID: 23558341 Free PMC article.

5

Selectome update: quality control and computational improvements to a database of positive selection.

Moretti S, Laurenczy B, Gharib WH, Castella B, Kuzniar A, Schabauer H, Studer RA, Valle M, Salamin N, Stockinger H, Robinson-Rechavi M. Moretti S, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D917-21. doi: 10.1093/nar/gkt1065. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225318 Free PMC article.

6

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Valle M, Schabauer H, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Salamin N. Valle M, et al. Bioinformatics. 2014 Apr 15;30(8):1129-1137. doi: 10.1093/bioinformatics/btt760. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389654 Free PMC article.

7

State aggregation for fast likelihood computations in molecular evolution.

Davydov II, Robinson-Rechavi M, Salamin N. Davydov II, et al. Bioinformatics. 2017 Feb 1;33(3):354-362. doi: 10.1093/bioinformatics/btw632. Bioinformatics. 2017. PMID: 28172542 Free PMC article.

8

No evidence for the radiation time lag model after whole genome duplications in Teleostei.

Laurent S, Salamin N, Robinson-Rechavi M. Laurent S, et al. PLoS One. 2017 Apr 20;12(4):e0176384. doi: 10.1371/journal.pone.0176384. eCollection 2017. PLoS One. 2017. PMID: 28426792 Free PMC article.

9

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection.

Davydov II, Salamin N, Robinson-Rechavi M. Davydov II, et al. Mol Biol Evol. 2019 Jun 1;36(6):1316-1332. doi: 10.1093/molbev/msz048. Mol Biol Evol. 2019. PMID: 30847475 Free PMC article.

10

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo.

Liu J, Frochaux M, Gardeux V, Deplancke B, Robinson-Rechavi M. Liu J, et al. BMC Biol. 2020 Sep 19;18(1):129. doi: 10.1186/s12915-020-00842-z. BMC Biol. 2020. PMID: 32950053 Free PMC article.

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