Gotea V - Search Results

1

The functional relevance of somatic synonymous mutations in melanoma and other cancers.

Gotea V, Gartner JJ, Qutob N, Elnitski L, Samuels Y. Gotea V, et al. Pigment Cell Melanoma Res. 2015 Nov;28(6):673-84. doi: 10.1111/pcmr.12413. Pigment Cell Melanoma Res. 2015. PMID: 26300548 Free PMC article. Review.

2

Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma.

Gartner JJ, Parker SC, Prickett TD, Dutton-Regester K, Stitzel ML, Lin JC, Davis S, Simhadri VL, Jha S, Katagiri N, Gotea V, Teer JK, Wei X, Morken MA, Bhanot UK; NISC Comparative Sequencing Program; Chen G, Elnitski LL, Davies MA, Gershenwald JE, Carter H, Karchin R, Robinson W, Robinson S, Rosenberg SA, Collins FS, Parmigiani G, Komar AA, Kimchi-Sarfaty C, Hayward NK, Margulies EH, Samuels Y. Gartner JJ, et al. Among authors: gotea v. Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13481-6. doi: 10.1073/pnas.1304227110. Epub 2013 Jul 30. Proc Natl Acad Sci U S A. 2013. PMID: 23901115 Free PMC article.

3

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types.

Chen YC, Gotea V, Margolin G, Elnitski L. Chen YC, et al. Among authors: gotea v. PLoS Comput Biol. 2017 Nov 10;13(11):e1005840. doi: 10.1371/journal.pcbi.1005840. eCollection 2017 Nov. PLoS Comput Biol. 2017. PMID: 29125844 Free PMC article.

4

CAGI experiments: Modeling sequence variant impact on gene splicing using predictions from computational tools.

Gotea V, Margolin G, Elnitski L. Gotea V, et al. Hum Mutat. 2019 Sep;40(9):1252-1260. doi: 10.1002/humu.23782. Epub 2019 Jun 27. Hum Mutat. 2019. PMID: 31066132 Free PMC article.

5

Characterization and clustering of kinase isoform expression in metastatic melanoma.

Holland DO, Gotea V, Fedkenheuer K, Jaiswal SK, Baugher C, Tan H, Fedkenheuer M, Elnitski L. Holland DO, et al. Among authors: gotea v. PLoS Comput Biol. 2022 May 13;18(5):e1010065. doi: 10.1371/journal.pcbi.1010065. eCollection 2022 May. PLoS Comput Biol. 2022. PMID: 35560144 Free PMC article.

6

Functional analysis of synonymous substitutions predicted to affect splicing of the CFTR gene.

Scott A, Petrykowska HM, Hefferon T, Gotea V, Elnitski L. Scott A, et al. Among authors: gotea v. J Cyst Fibros. 2012 Dec;11(6):511-7. doi: 10.1016/j.jcf.2012.04.009. Epub 2012 May 14. J Cyst Fibros. 2012. PMID: 22591852 Free PMC article.

7

Ascertaining regions affected by GC-biased gene conversion through weak-to-strong mutational hotspots.

Gotea V, Elnitski L. Gotea V, et al. Genomics. 2014 May-Jun;103(5-6):349-56. doi: 10.1016/j.ygeno.2014.04.001. Epub 2014 Apr 13. Genomics. 2014. PMID: 24727706 Free PMC article.

8

Tissue-specific and ubiquitous expression patterns from alternative promoters of human genes.

Jacox E, Gotea V, Ovcharenko I, Elnitski L. Jacox E, et al. Among authors: gotea v. PLoS One. 2010 Aug 18;5(8):e12274. doi: 10.1371/journal.pone.0012274. PLoS One. 2010. PMID: 20806066 Free PMC article.

9

Bidirectional promoters as important drivers for the emergence of species-specific transcripts.

Gotea V, Petrykowska HM, Elnitski L. Gotea V, et al. PLoS One. 2013;8(2):e57323. doi: 10.1371/journal.pone.0057323. Epub 2013 Feb 27. PLoS One. 2013. PMID: 23460838 Free PMC article.

10

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype.

Sánchez-Vega F, Gotea V, Margolin G, Elnitski L. Sánchez-Vega F, et al. Among authors: gotea v. Epigenetics Chromatin. 2015 Apr 17;8:14. doi: 10.1186/s13072-015-0007-7. eCollection 2015. Epigenetics Chromatin. 2015. PMID: 25960768 Free PMC article.

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