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Fewer permutations, more accurate P-values.
Knijnenburg TA, Wessels LF, Reinders MJ, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. Bioinformatics. 2009 Jun 15;25(12):i161-8. doi: 10.1093/bioinformatics/btp211. Bioinformatics. 2009. PMID: 19477983 Free PMC article.
Genome-wide analysis of effectors of peroxisome biogenesis.
Saleem RA, Long-O'Donnell R, Dilworth DJ, Armstrong AM, Jamakhandi AP, Wan Y, Knijnenburg TA, Niemistö A, Boyle J, Rachubinski RA, Shmulevich I, Aitchison JD. Saleem RA, et al. Among authors: shmulevich i. PLoS One. 2010 Aug 4;5(8):e11953. doi: 10.1371/journal.pone.0011953. PLoS One. 2010. PMID: 20694151 Free PMC article.
Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins.
Mirzaei H, Knijnenburg TA, Kim B, Robinson M, Picotti P, Carter GW, Li S, Dilworth DJ, Eng JK, Aitchison JD, Shmulevich I, Galitski T, Aebersold R, Ranish J. Mirzaei H, et al. Among authors: shmulevich i. Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3645-50. doi: 10.1073/pnas.1216918110. Epub 2013 Feb 6. Proc Natl Acad Sci U S A. 2013. PMID: 23388641 Free PMC article.
The Cancer Genome Atlas Pan-Cancer analysis project.
Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Among authors: shmulevich i. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.
Multiscale representation of genomic signals.
Knijnenburg TA, Ramsey SA, Berman BP, Kennedy KA, Smit AF, Wessels LF, Laird PW, Aderem A, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. Nat Methods. 2014 Jun;11(6):689-94. doi: 10.1038/nmeth.2924. Epub 2014 Apr 13. Nat Methods. 2014. PMID: 24727652 Free PMC article.
247 results