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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.
Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY. Greninger AL, et al. Among authors: stryke d. Genome Med. 2015 Sep 29;7:99. doi: 10.1186/s13073-015-0220-9. Genome Med. 2015. PMID: 26416663 Free PMC article.
A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.
Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, Dominguez SR, Glaser C, Aldrovandi G, Chiu CY. Greninger AL, et al. Among authors: stryke d. Lancet Infect Dis. 2015 Jun;15(6):671-82. doi: 10.1016/S1473-3099(15)70093-9. Epub 2015 Mar 31. Lancet Infect Dis. 2015. PMID: 25837569 Free PMC article.
Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016.
Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, Miller S, Klausner JD. Chiu CY, et al. Among authors: stryke d. Emerg Infect Dis. 2017 Oct;23(10):1964-1968. doi: 10.3201/eid2310.161986. Emerg Infect Dis. 2017. PMID: 28930022 Free PMC article.
Nanopore DNA Sequencing and Genome Assembly on the International Space Station.
Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, Stryke D, Somasekar S, Alexander N, Yu G, Mason CE, Burton AS. Castro-Wallace SL, et al. Among authors: stryke d. Sci Rep. 2017 Dec 21;7(1):18022. doi: 10.1038/s41598-017-18364-0. Sci Rep. 2017. PMID: 29269933 Free PMC article.
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid.
Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, DeBiasi R, Dominguez S, Chiu CY. Miller S, et al. Among authors: stryke d. Genome Res. 2019 May;29(5):831-842. doi: 10.1101/gr.238170.118. Epub 2019 Apr 16. Genome Res. 2019. PMID: 30992304 Free PMC article.
Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis.
Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, DeRisi JL, Gelfand JM, Naccache SN, Bender J, Dien Bard J, Murkey J, Carlson M, Vespa PM, Vijayan T, Allyn PR, Campeau S, Humphries RM, Klausner JD, Ganzon CD, Memar F, Ocampo NA, Zimmermann LL, Cohen SH, Polage CR, DeBiasi RL, Haller B, Dallas R, Maron G, Hayden R, Messacar K, Dominguez SR, Miller S, Chiu CY. Wilson MR, et al. Among authors: stryke d. N Engl J Med. 2019 Jun 13;380(24):2327-2340. doi: 10.1056/NEJMoa1803396. N Engl J Med. 2019. PMID: 31189036 Free PMC article.
Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination.
Tan SK, Granados AC, Bouquet J, Hoy-Schulz YE, Green L, Federman S, Stryke D, Haggerty TD, Ley C, Yeh MT, Jannat K, Maldonado YA, Andino R, Parsonnet J, Chiu CY. Tan SK, et al. Among authors: stryke d. Sci Rep. 2020 Sep 21;10(1):15392. doi: 10.1038/s41598-020-71791-4. Sci Rep. 2020. PMID: 32958861 Free PMC article.
Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.
Gu W, Deng X, Lee M, Sucu YD, Arevalo S, Stryke D, Federman S, Gopez A, Reyes K, Zorn K, Sample H, Yu G, Ishpuniani G, Briggs B, Chow ED, Berger A, Wilson MR, Wang C, Hsu E, Miller S, DeRisi JL, Chiu CY. Gu W, et al. Among authors: stryke d. Nat Med. 2021 Jan;27(1):115-124. doi: 10.1038/s41591-020-1105-z. Epub 2020 Nov 9. Nat Med. 2021. PMID: 33169017 Free PMC article.
Longitudinal comparison of the developing gut virome in infants and their mothers.
Walters WA, Granados AC, Ley C, Federman S, Stryke D, Santos Y, Haggerty T, Sotomayor-Gonzalez A, Servellita V, Ley RE, Parsonnet J, Chiu CY. Walters WA, et al. Among authors: stryke d. Cell Host Microbe. 2023 Feb 8;31(2):187-198.e3. doi: 10.1016/j.chom.2023.01.003. Cell Host Microbe. 2023. PMID: 36758519 Free PMC article.
Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery.
Tan JK, Servellita V, Stryke D, Kelly E, Streithorst J, Sumimoto N, Foresythe A, Huh HJ, Nguyen J, Oseguera M, Brazer N, Tang J, Ingebrigtsen D, Fung B, Reyes H, Hillberg M, Chen A, Guevara H, Yagi S, Morales C, Wadford DA, Mourani PM, Langelier CR, de Lorenzi-Tognon M, Benoit P, Chiu CY. Tan JK, et al. Among authors: stryke d. Nat Commun. 2024 Nov 12;15(1):9016. doi: 10.1038/s41467-024-51470-y. Nat Commun. 2024. PMID: 39532844 Free PMC article.
48 results