Depken M - Search Results

1

Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site.

Dulin D, Vilfan ID, Berghuis BA, Poranen MM, Depken M, Dekker NH. Dulin D, et al. Among authors: depken m. Nucleic Acids Res. 2015 Dec 2;43(21):10421-9. doi: 10.1093/nar/gkv1098. Epub 2015 Oct 22. Nucleic Acids Res. 2015. PMID: 26496948 Free PMC article.

2

Intermittent transcription dynamics for the rapid production of long transcripts of high fidelity.

Depken M, Parrondo JM, Grill SW. Depken M, et al. Cell Rep. 2013 Oct 31;5(2):521-30. doi: 10.1016/j.celrep.2013.09.007. Epub 2013 Oct 10. Cell Rep. 2013. PMID: 24120867 Free article.

3

Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells.

Moolman MC, Krishnan ST, Kerssemakers JW, van den Berg A, Tulinski P, Depken M, Reyes-Lamothe R, Sherratt DJ, Dekker NH. Moolman MC, et al. Among authors: depken m. Nat Commun. 2014 Dec 18;5:5820. doi: 10.1038/ncomms6820. Nat Commun. 2014. PMID: 25520215 Free PMC article.

4

Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase.

Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH. Dulin D, et al. Among authors: depken m. Cell Rep. 2015 Feb 17;10(6):983-992. doi: 10.1016/j.celrep.2015.01.031. Epub 2015 Feb 12. Cell Rep. 2015. PMID: 25683720 Free article.

5

Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Berghuis BA, Dulin D, Xu ZQ, van Laar T, Cross B, Janissen R, Jergic S, Dixon NE, Depken M, Dekker NH. Berghuis BA, et al. Among authors: depken m. Nat Chem Biol. 2015 Aug;11(8):579-85. doi: 10.1038/nchembio.1857. Epub 2015 Jul 6. Nat Chem Biol. 2015. PMID: 26147356

6

Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments.

Dulin D, Berghuis BA, Depken M, Dekker NH. Dulin D, et al. Among authors: depken m. Curr Opin Struct Biol. 2015 Oct;34:116-22. doi: 10.1016/j.sbi.2015.08.007. Epub 2015 Oct 1. Curr Opin Struct Biol. 2015. PMID: 26434413 Review.

7

Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes.

van den Berg AA, Depken M. van den Berg AA, et al. Among authors: depken m. Nucleic Acids Res. 2017 Jul 27;45(13):7623-7632. doi: 10.1093/nar/gkx513. Nucleic Acids Res. 2017. PMID: 28586463 Free PMC article.

8

Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers.

Dulin D, Arnold JJ, van Laar T, Oh HS, Lee C, Perkins AL, Harki DA, Depken M, Cameron CE, Dekker NH. Dulin D, et al. Among authors: depken m. Cell Rep. 2017 Oct 24;21(4):1063-1076. doi: 10.1016/j.celrep.2017.10.005. Cell Rep. 2017. PMID: 29069588 Free PMC article.

9

What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments.

Berghuis BA, Raducanu VS, Elshenawy MM, Jergic S, Depken M, Dixon NE, Hamdan SM, Dekker NH. Berghuis BA, et al. Among authors: depken m. Crit Rev Biochem Mol Biol. 2018 Feb;53(1):49-63. doi: 10.1080/10409238.2017.1394264. Epub 2017 Nov 6. Crit Rev Biochem Mol Biol. 2018. PMID: 29108427 Review.

10

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria.

Dulin D, Bauer DLV, Malinen AM, Bakermans JJW, Kaller M, Morichaud Z, Petushkov I, Depken M, Brodolin K, Kulbachinskiy A, Kapanidis AN. Dulin D, et al. Among authors: depken m. Nat Commun. 2018 Apr 16;9(1):1478. doi: 10.1038/s41467-018-03902-9. Nat Commun. 2018. PMID: 29662062 Free PMC article.

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