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Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer.
Murtaza M, Dawson SJ, Pogrebniak K, Rueda OM, Provenzano E, Grant J, Chin SF, Tsui DWY, Marass F, Gale D, Ali HR, Shah P, Contente-Cuomo T, Farahani H, Shumansky K, Kingsbury Z, Humphray S, Bentley D, Shah SP, Wallis M, Rosenfeld N, Caldas C. Murtaza M, et al. Among authors: farahani h. Nat Commun. 2015 Nov 4;6:8760. doi: 10.1038/ncomms9760. Nat Commun. 2015. PMID: 26530965 Free PMC article.
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.
Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, Gelmon K, Chia S, Mar C, Wan A, Laks E, Biele J, Shumansky K, Rosner J, McPherson A, Nielsen C, Roth AJ, Lefebvre C, Bashashati A, de Souza C, Siu C, Aniba R, Brimhall J, Oloumi A, Osako T, Bruna A, Sandoval JL, Algara T, Greenwood W, Leung K, Cheng H, Xue H, Wang Y, Lin D, Mungall AJ, Moore R, Zhao Y, Lorette J, Nguyen L, Huntsman D, Eaves CJ, Hansen C, Marra MA, Caldas C, Shah SP, Aparicio S. Eirew P, et al. Among authors: farahani h. Nature. 2015 Feb 19;518(7539):422-6. doi: 10.1038/nature13952. Epub 2014 Nov 26. Nature. 2015. PMID: 25470049 Free PMC article.
clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.
Campbell KR, Steif A, Laks E, Zahn H, Lai D, McPherson A, Farahani H, Kabeer F, O'Flanagan C, Biele J, Brimhall J, Wang B, Walters P; IMAXT Consortium; Bouchard-Côté A, Aparicio S, Shah SP. Campbell KR, et al. Among authors: farahani h. Genome Biol. 2019 Mar 12;20(1):54. doi: 10.1186/s13059-019-1645-z. Genome Biol. 2019. PMID: 30866997 Free PMC article.
VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology.
Nakhli R, Rich K, Zhang A, Darbandsari A, Shenasa E, Hadjifaradji A, Thiessen S, Milne K, Jones SJM, McAlpine JN, Nelson BH, Gilks CB, Farahani H, Bashashati A. Nakhli R, et al. Among authors: farahani h. Nat Commun. 2024 May 10;15(1):3942. doi: 10.1038/s41467-024-48062-1. Nat Commun. 2024. PMID: 38729933 Free PMC article.
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers.
Darbandsari A, Farahani H, Asadi M, Wiens M, Cochrane D, Khajegili Mirabadi A, Jamieson A, Farnell D, Ahmadvand P, Douglas M, Leung S, Abolmaesumi P, Jones SJM, Talhouk A, Kommoss S, Gilks CB, Huntsman DG, Singh N, McAlpine JN, Bashashati A. Darbandsari A, et al. Among authors: farahani h. Nat Commun. 2024 Jun 26;15(1):4973. doi: 10.1038/s41467-024-49017-2. Nat Commun. 2024. PMID: 38926357 Free PMC article.
142 results