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HLA typing from RNA-Seq sequence reads.
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U. Boegel S, et al. Among authors: castle jc. Genome Med. 2012 Dec 22;4(12):102. doi: 10.1186/gm403. eCollection 2012. Genome Med. 2012. PMID: 23259685 Free PMC article.
In Silico HLA Typing Using Standard RNA-Seq Sequence Reads.
Boegel S, Scholtalbers J, Löwer M, Sahin U, Castle JC. Boegel S, et al. Among authors: castle jc. Methods Mol Biol. 2015;1310:247-58. doi: 10.1007/978-1-4939-2690-9_20. Methods Mol Biol. 2015. PMID: 26024640
HLA and proteasome expression body map.
Boegel S, Löwer M, Bukur T, Sorn P, Castle JC, Sahin U. Boegel S, et al. Among authors: castle jc. BMC Med Genomics. 2018 Mar 27;11(1):36. doi: 10.1186/s12920-018-0354-x. BMC Med Genomics. 2018. PMID: 29587858 Free PMC article.
Galaxy LIMS for next-generation sequencing.
Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U. Scholtalbers J, et al. Bioinformatics. 2013 May 1;29(9):1233-4. doi: 10.1093/bioinformatics/btt115. Epub 2013 Mar 11. Bioinformatics. 2013. PMID: 23479349
Mutant MHC class II epitopes drive therapeutic immune responses to cancer.
Kreiter S, Vormehr M, van de Roemer N, Diken M, Löwer M, Diekmann J, Boegel S, Schrörs B, Vascotto F, Castle JC, Tadmor AD, Schoenberger SP, Huber C, Türeci Ö, Sahin U. Kreiter S, et al. Among authors: castle jc. Nature. 2015 Apr 30;520(7549):692-6. doi: 10.1038/nature14426. Epub 2015 Apr 22. Nature. 2015. PMID: 25901682 Free PMC article.
83 results