Davey NE - Search Results

1

Short linear motifs - ex nihilo evolution of protein regulation.

Davey NE, Cyert MS, Moses AM. Davey NE, et al. Cell Commun Signal. 2015 Nov 21;13:43. doi: 10.1186/s12964-015-0120-z. Cell Commun Signal. 2015. PMID: 26589632 Free PMC article. Review.

2

SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent.

Davey NE, Shields DC, Edwards RJ. Davey NE, et al. Nucleic Acids Res. 2006 Jul 19;34(12):3546-54. doi: 10.1093/nar/gkl486. Print 2006. Nucleic Acids Res. 2006. PMID: 16855291 Free PMC article.

3

The SLiMDisc server: short, linear motif discovery in proteins.

Davey NE, Edwards RJ, Shields DC. Davey NE, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W455-9. doi: 10.1093/nar/gkm400. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576682 Free PMC article.

4

SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.

Edwards RJ, Davey NE, Shields DC. Edwards RJ, et al. Among authors: davey ne. PLoS One. 2007 Oct 3;2(10):e967. doi: 10.1371/journal.pone.0000967. PLoS One. 2007. PMID: 17912346 Free PMC article.

5

CompariMotif: quick and easy comparisons of sequence motifs.

Edwards RJ, Davey NE, Shields DC. Edwards RJ, et al. Among authors: davey ne. Bioinformatics. 2008 May 15;24(10):1307-9. doi: 10.1093/bioinformatics/btn105. Epub 2008 Mar 28. Bioinformatics. 2008. PMID: 18375965

6

Web server to identify similarity of amino acid motifs to compounds (SAAMCO).

Casey FP, Davey NE, Baran I, Varekova RS, Shields DC. Casey FP, et al. Among authors: davey ne. J Chem Inf Model. 2008 Jul;48(7):1524-9. doi: 10.1021/ci8000474. Epub 2008 Jun 21. J Chem Inf Model. 2008. PMID: 18570372

7

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.

Davey NE, Shields DC, Edwards RJ. Davey NE, et al. Bioinformatics. 2009 Feb 15;25(4):443-50. doi: 10.1093/bioinformatics/btn664. Epub 2009 Jan 9. Bioinformatics. 2009. PMID: 19136552

8

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.

Davey NE, Edwards RJ, Shields DC. Davey NE, et al. BMC Bioinformatics. 2010 Jan 7;11:14. doi: 10.1186/1471-2105-11-14. BMC Bioinformatics. 2010. PMID: 20055997 Free PMC article.

9

Computational identification and analysis of protein short linear motifs.

Davey NE, Edwards RJ, Shields DC. Davey NE, et al. Front Biosci (Landmark Ed). 2010 Jun 1;15(3):801-25. doi: 10.2741/3647. Front Biosci (Landmark Ed). 2010. PMID: 20515727 Free article. Review.

10

Interactome-wide prediction of short, disordered protein interaction motifs in humans.

Edwards RJ, Davey NE, O'Brien K, Shields DC. Edwards RJ, et al. Among authors: davey ne. Mol Biosyst. 2012 Jan;8(1):282-95. doi: 10.1039/c1mb05212h. Epub 2011 Aug 30. Mol Biosyst. 2012. PMID: 21879107 Free article.

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