Dickson A - Search Results

1

Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling.

Dickson A, Maienschein-Cline M, Tovo-Dwyer A, Hammond JR, Dinner AR. Dickson A, et al. J Chem Theory Comput. 2011 Sep 13;7(9):2710-20. doi: 10.1021/ct200371n. Epub 2011 Aug 23. J Chem Theory Comput. 2011. PMID: 26605464

2

Nonequilibrium umbrella sampling in spaces of many order parameters.

Dickson A, Warmflash A, Dinner AR. Dickson A, et al. J Chem Phys. 2009 Feb 21;130(7):074104. doi: 10.1063/1.3070677. J Chem Phys. 2009. PMID: 19239281

3

Enhanced sampling of nonequilibrium steady states.

Dickson A, Dinner AR. Dickson A, et al. Annu Rev Phys Chem. 2010;61:441-59. doi: 10.1146/annurev.physchem.012809.103433. Annu Rev Phys Chem. 2010. PMID: 20367083 Review.

4

Separating forward and backward pathways in nonequilibrium umbrella sampling.

Dickson A, Warmflash A, Dinner AR. Dickson A, et al. J Chem Phys. 2009 Oct 21;131(15):154104. doi: 10.1063/1.3244561. J Chem Phys. 2009. PMID: 20568844

5

Incorporating friction and collective shear moves into a lattice gas.

Dickson A, Nasto A, Dinner AR. Dickson A, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051111. doi: 10.1103/PhysRevE.81.051111. Epub 2010 May 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20866189

6

Entrainment of a driven oscillator as a dynamical phase transition.

Dickson A, Tabei SM, Dinner AR. Dickson A, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 1):061134. doi: 10.1103/PhysRevE.84.061134. Epub 2011 Dec 20. Phys Rev E Stat Nonlin Soft Matter Phys. 2011. PMID: 22304067

7

Long-Range Changes in Neurolysin Dynamics Upon Inhibitor Binding.

Uyar A, Karamyan VT, Dickson A. Uyar A, et al. Among authors: dickson a. J Chem Theory Comput. 2018 Jan 9;14(1):444-452. doi: 10.1021/acs.jctc.7b00944. Epub 2017 Dec 8. J Chem Theory Comput. 2018. PMID: 29179556

8

Perturbation of ACE2 Structural Ensembles by SARS-CoV-2 Spike Protein Binding.

Uyar A, Dickson A. Uyar A, et al. Among authors: dickson a. J Chem Theory Comput. 2021 Sep 14;17(9):5896-5906. doi: 10.1021/acs.jctc.1c00325. Epub 2021 Aug 12. J Chem Theory Comput. 2021. PMID: 34383488 Free PMC article.

9

Flexible Topology: A Dynamic Model of a Continuous Chemical Space.

Donyapour N, Fathi Niazi F, Roussey NM, Bose S, Dickson A. Donyapour N, et al. Among authors: dickson a. J Chem Theory Comput. 2023 Aug 8;19(15):5088-5098. doi: 10.1021/acs.jctc.3c00409. Epub 2023 Jul 24. J Chem Theory Comput. 2023. PMID: 37487141 Free PMC article.

10

Quantifying hub-like behavior in protein folding networks.

Dickson A, Brooks CL 3rd. Dickson A, et al. J Chem Theory Comput. 2012;8(9):3044-3052. doi: 10.1021/ct300537s. J Chem Theory Comput. 2012. PMID: 24027492 Free PMC article.

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