Dinner AR - Search Results

1

Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling.

Dickson A, Maienschein-Cline M, Tovo-Dwyer A, Hammond JR, Dinner AR. Dickson A, et al. Among authors: dinner ar. J Chem Theory Comput. 2011 Sep 13;7(9):2710-20. doi: 10.1021/ct200371n. Epub 2011 Aug 23. J Chem Theory Comput. 2011. PMID: 26605464

2

Umbrella sampling for nonequilibrium processes.

Warmflash A, Bhimalapuram P, Dinner AR. Warmflash A, et al. Among authors: dinner ar. J Chem Phys. 2007 Oct 21;127(15):154112. doi: 10.1063/1.2784118. J Chem Phys. 2007. PMID: 17949137

3

Nonequilibrium umbrella sampling in spaces of many order parameters.

Dickson A, Warmflash A, Dinner AR. Dickson A, et al. Among authors: dinner ar. J Chem Phys. 2009 Feb 21;130(7):074104. doi: 10.1063/1.3070677. J Chem Phys. 2009. PMID: 19239281

4

Enhanced sampling of nonequilibrium steady states.

Dickson A, Dinner AR. Dickson A, et al. Among authors: dinner ar. Annu Rev Phys Chem. 2010;61:441-59. doi: 10.1146/annurev.physchem.012809.103433. Annu Rev Phys Chem. 2010. PMID: 20367083 Review.

5

Separating forward and backward pathways in nonequilibrium umbrella sampling.

Dickson A, Warmflash A, Dinner AR. Dickson A, et al. Among authors: dinner ar. J Chem Phys. 2009 Oct 21;131(15):154104. doi: 10.1063/1.3244561. J Chem Phys. 2009. PMID: 20568844

6

Incorporating friction and collective shear moves into a lattice gas.

Dickson A, Nasto A, Dinner AR. Dickson A, et al. Among authors: dinner ar. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051111. doi: 10.1103/PhysRevE.81.051111. Epub 2010 May 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20866189

7

Defining cooperativity in gene regulation locally through intrinsic noise.

Maienschein-Cline M, Warmflash A, Dinner AR. Maienschein-Cline M, et al. Among authors: dinner ar. IET Syst Biol. 2010 Nov;4(6):379-92. doi: 10.1049/iet-syb.2009.0070. IET Syst Biol. 2010. PMID: 21073237 Free PMC article.

8

Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2.

Mandal M, Powers SE, Maienschein-Cline M, Bartom ET, Hamel KM, Kee BL, Dinner AR, Clark MR. Mandal M, et al. Among authors: dinner ar. Nat Immunol. 2011 Oct 30;12(12):1212-20. doi: 10.1038/ni.2136. Nat Immunol. 2011. PMID: 22037603 Free PMC article.

9

Discovering transcription factor regulatory targets using gene expression and binding data.

Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR. Maienschein-Cline M, et al. Among authors: dinner ar. Bioinformatics. 2012 Jan 15;28(2):206-13. doi: 10.1093/bioinformatics/btr628. Epub 2011 Nov 13. Bioinformatics. 2012. PMID: 22084256 Free PMC article.

10

A self-reinforcing regulatory network triggered by limiting IL-7 activates pre-BCR signaling and differentiation.

Ochiai K, Maienschein-Cline M, Mandal M, Triggs JR, Bertolino E, Sciammas R, Dinner AR, Clark MR, Singh H. Ochiai K, et al. Among authors: dinner ar. Nat Immunol. 2012 Jan 22;13(3):300-7. doi: 10.1038/ni.2210. Nat Immunol. 2012. PMID: 22267219 Free PMC article.

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