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Data standards can boost metabolomics research, and if there is a will, there is a way.
Rocca-Serra P, Salek RM, Arita M, Correa E, Dayalan S, Gonzalez-Beltran A, Ebbels T, Goodacre R, Hastings J, Haug K, Koulman A, Nikolski M, Oresic M, Sansone SA, Schober D, Smith J, Steinbeck C, Viant MR, Neumann S. Rocca-Serra P, et al. Among authors: haug k. Metabolomics. 2016;12:14. doi: 10.1007/s11306-015-0879-3. Epub 2015 Nov 17. Metabolomics. 2016. PMID: 26612985 Free PMC article. Review.
MetaboLights: towards a new COSMOS of metabolomics data management.
Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL. Steinbeck C, et al. Among authors: haug k. Metabolomics. 2012 Oct;8(5):757-760. doi: 10.1007/s11306-012-0462-0. Epub 2012 Sep 25. Metabolomics. 2012. PMID: 23060735 Free PMC article.
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.
Salek RM, Neumann S, Schober D, Hummel J, Billiau K, Kopka J, Correa E, Reijmers T, Rosato A, Tenori L, Turano P, Marin S, Deborde C, Jacob D, Rolin D, Dartigues B, Conesa P, Haug K, Rocca-Serra P, O'Hagan S, Hao J, van Vliet M, Sysi-Aho M, Ludwig C, Bouwman J, Cascante M, Ebbels T, Griffin JL, Moing A, Nikolski M, Oresic M, Sansone SA, Viant MR, Goodacre R, Günther UL, Hankemeier T, Luchinat C, Walther D, Steinbeck C. Salek RM, et al. Among authors: haug k. Metabolomics. 2015;11(6):1587-1597. doi: 10.1007/s11306-015-0810-y. Epub 2015 May 26. Metabolomics. 2015. PMID: 26491418 Free PMC article.
Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy.
Weber RJM, Lawson TN, Salek RM, Ebbels TMD, Glen RC, Goodacre R, Griffin JL, Haug K, Koulman A, Moreno P, Ralser M, Steinbeck C, Dunn WB, Viant MR. Weber RJM, et al. Among authors: haug k. Metabolomics. 2017;13(2):12. doi: 10.1007/s11306-016-1147-x. Epub 2016 Dec 27. Metabolomics. 2017. PMID: 28090198 Free PMC article. No abstract available.
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.
Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, Mahendraker T, Williams M, Neumann S, Rocca-Serra P, Maguire E, González-Beltrán A, Sansone SA, Griffin JL, Steinbeck C. Haug K, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D781-6. doi: 10.1093/nar/gks1004. Epub 2012 Oct 29. Nucleic Acids Res. 2013. PMID: 23109552 Free PMC article.
The MetaboLights repository: curation challenges in metabolomics.
Salek RM, Haug K, Conesa P, Hastings J, Williams M, Mahendraker T, Maguire E, González-Beltrán AN, Rocca-Serra P, Sansone SA, Steinbeck C. Salek RM, et al. Among authors: haug k. Database (Oxford). 2013 Apr 29;2013:bat029. doi: 10.1093/database/bat029. Print 2013. Database (Oxford). 2013. PMID: 23630246 Free PMC article.
Ten recommendations for software engineering in research.
Hastings J, Haug K, Steinbeck C. Hastings J, et al. Among authors: haug k. Gigascience. 2014 Dec 4;3(1):31. doi: 10.1186/2047-217X-3-31. eCollection 2014. Gigascience. 2014. PMID: 25685331 Free PMC article.
SpeckTackle: JavaScript charts for spectroscopy.
Beisken S, Conesa P, Haug K, Salek RM, Steinbeck C. Beisken S, et al. Among authors: haug k. J Cheminform. 2015 May 9;7:17. doi: 10.1186/s13321-015-0065-7. eCollection 2015. J Cheminform. 2015. PMID: 25984241 Free PMC article.
MetaboLights: An Open-Access Database Repository for Metabolomics Data.
Kale NS, Haug K, Conesa P, Jayseelan K, Moreno P, Rocca-Serra P, Nainala VC, Spicer RA, Williams M, Li X, Salek RM, Griffin JL, Steinbeck C. Kale NS, et al. Among authors: haug k. Curr Protoc Bioinformatics. 2016 Mar 24;53:14.13.1-14.13.18. doi: 10.1002/0471250953.bi1413s53. Curr Protoc Bioinformatics. 2016. PMID: 27010336
232 results