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Utilization of Benchtop Next Generation Sequencing Platforms Ion Torrent PGM and MiSeq in Noninvasive Prenatal Testing for Chromosome 21 Trisomy and Testing of Impact of In Silico and Physical Size Selection on Its Analytical Performance.
Minarik G, Repiska G, Hyblova M, Nagyova E, Soltys K, Budis J, Duris F, Sysak R, Gerykova Bujalkova M, Vlkova-Izrael B, Biro O, Nagy B, Szemes T. Minarik G, et al. Among authors: duris f. PLoS One. 2015 Dec 15;10(12):e0144811. doi: 10.1371/journal.pone.0144811. eCollection 2015. PLoS One. 2015. PMID: 26669558 Free PMC article.
Dante: genotyping of known complex and expanded short tandem repeats.
Budiš J, Kucharík M, Ďuriš F, Gazdarica J, Zrubcová M, Ficek A, Szemes T, Brejová B, Radvanszky J. Budiš J, et al. Among authors: duris f. Bioinformatics. 2019 Apr 15;35(8):1310-1317. doi: 10.1093/bioinformatics/bty791. Bioinformatics. 2019. PMID: 30203023
SnakeLines: integrated set of computational pipelines for sequencing reads.
Budiš J, Krampl W, Kucharík M, Hekel R, Goga A, Sitarčík J, Lichvár M, Smol'ak D, Böhmer M, Baláž A, Ďuriš F, Gazdarica J, Šoltys K, Turňa J, Radvánszky J, Szemes T. Budiš J, et al. Among authors: duris f. J Integr Bioinform. 2023 Aug 21;20(3):20220059. doi: 10.1515/jib-2022-0059. eCollection 2023 Sep 1. J Integr Bioinform. 2023. PMID: 37602733 Free PMC article.