Geeven G - Search Results

1

Local compartment changes and regulatory landscape alterations in histone H1-depleted cells.

Geeven G, Zhu Y, Kim BJ, Bartholdy BA, Yang SM, Macfarlan TS, Gifford WD, Pfaff SL, Verstegen MJ, Pinto H, Vermunt MW, Creyghton MP, Wijchers PJ, Stamatoyannopoulos JA, Skoultchi AI, de Laat W. Geeven G, et al. Genome Biol. 2015 Dec 23;16:289. doi: 10.1186/s13059-015-0857-0. Genome Biol. 2015. PMID: 26700097 Free PMC article.

2

Characterization and dynamics of pericentromere-associated domains in mice.

Wijchers PJ, Geeven G, Eyres M, Bergsma AJ, Janssen M, Verstegen M, Zhu Y, Schell Y, Vermeulen C, de Wit E, de Laat W. Wijchers PJ, et al. Among authors: geeven g. Genome Res. 2015 Jul;25(7):958-69. doi: 10.1101/gr.186643.114. Epub 2015 Apr 16. Genome Res. 2015. PMID: 25883320 Free PMC article.

3

Epigenomic annotation of gene regulatory alterations during evolution of the primate brain.

Vermunt MW, Tan SC, Castelijns B, Geeven G, Reinink P, de Bruijn E, Kondova I, Persengiev S; Netherlands Brain Bank; Bontrop R, Cuppen E, de Laat W, Creyghton MP. Vermunt MW, et al. Among authors: geeven g. Nat Neurosci. 2016 Mar;19(3):494-503. doi: 10.1038/nn.4229. Epub 2016 Jan 25. Nat Neurosci. 2016. PMID: 26807951

4

Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments.

Wijchers PJ, Krijger PHL, Geeven G, Zhu Y, Denker A, Verstegen MJAM, Valdes-Quezada C, Vermeulen C, Janssen M, Teunissen H, Anink-Groenen LCM, Verschure PJ, de Laat W. Wijchers PJ, et al. Among authors: geeven g. Mol Cell. 2016 Feb 4;61(3):461-473. doi: 10.1016/j.molcel.2016.01.001. Epub 2016 Jan 28. Mol Cell. 2016. PMID: 26833089 Free PMC article.

5

Enhancers reside in a unique epigenetic environment during early zebrafish development.

Kaaij LJ, Mokry M, Zhou M, Musheev M, Geeven G, Melquiond AS, de Jesus Domingues AM, de Laat W, Niehrs C, Smith AD, Ketting RF. Kaaij LJ, et al. Among authors: geeven g. Genome Biol. 2016 Jul 5;17(1):146. doi: 10.1186/s13059-016-1013-1. Genome Biol. 2016. PMID: 27381023 Free PMC article.

6

Large-scale identification of coregulated enhancer networks in the adult human brain.

Vermunt MW, Reinink P, Korving J, de Bruijn E, Creyghton PM, Basak O, Geeven G, Toonen PW, Lansu N, Meunier C, van Heesch S; Netherlands Brain Bank; Clevers H, de Laat W, Cuppen E, Creyghton MP. Vermunt MW, et al. Among authors: geeven g. Cell Rep. 2014 Oct 23;9(2):767-79. doi: 10.1016/j.celrep.2014.09.023. Epub 2014 Oct 16. Cell Rep. 2014. PMID: 25373911 Free article.

7

peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data.

Geeven G, Teunissen H, de Laat W, de Wit E. Geeven G, et al. Nucleic Acids Res. 2018 Sep 6;46(15):e91. doi: 10.1093/nar/gky443. Nucleic Acids Res. 2018. PMID: 29800273 Free PMC article.

8

Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies.

Vermeulen C, Allahyar A, Bouwman BAM, Krijger PHL, Verstegen MJAM, Geeven G, Valdes-Quezada C, Renkens I, Straver R, Kloosterman WP, de Ridder J, de Laat W. Vermeulen C, et al. Among authors: geeven g. Nat Protoc. 2020 Feb;15(2):364-397. doi: 10.1038/s41596-019-0242-7. Epub 2020 Jan 13. Nat Protoc. 2020. PMID: 31932773

9

Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients.

Castelijns B, Baak ML, Timpanaro IS, Wiggers CRM, Vermunt MW, Shang P, Kondova I, Geeven G, Bianchi V, de Laat W, Geijsen N, Creyghton MP. Castelijns B, et al. Among authors: geeven g. Nat Commun. 2020 Jan 16;11(1):301. doi: 10.1038/s41467-019-14269-w. Nat Commun. 2020. PMID: 31949148 Free PMC article.

10

4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis.

Krijger PHL, Geeven G, Bianchi V, Hilvering CRE, de Laat W. Krijger PHL, et al. Among authors: geeven g. Methods. 2020 Jan 1;170:17-32. doi: 10.1016/j.ymeth.2019.07.014. Epub 2019 Jul 26. Methods. 2020. PMID: 31351925 Free article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

30 results

Search Page

Filters