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Visible Machine Learning for Biomedicine.
Yu MK, Ma J, Fisher J, Kreisberg JF, Raphael BJ, Ideker T. Yu MK, et al. Cell. 2018 Jun 14;173(7):1562-1565. doi: 10.1016/j.cell.2018.05.056. Cell. 2018. PMID: 29906441 Free PMC article.
Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.
Kramer MH, Farré JC, Mitra K, Yu MK, Ono K, Demchak B, Licon K, Flagg M, Balakrishnan R, Cherry JM, Subramani S, Ideker T. Kramer MH, et al. Among authors: yu mk. Mol Cell. 2017 Feb 16;65(4):761-774.e5. doi: 10.1016/j.molcel.2016.12.024. Epub 2017 Jan 26. Mol Cell. 2017. PMID: 28132844 Free PMC article.
NeXO Web: the NeXO ontology database and visualization platform.
Dutkowski J, Ono K, Kramer M, Yu M, Pratt D, Demchak B, Ideker T. Dutkowski J, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D1269-74. doi: 10.1093/nar/gkt1192. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271398 Free PMC article.
Inferring gene ontologies from pairwise similarity data.
Kramer M, Dutkowski J, Yu M, Bafna V, Ideker T. Kramer M, et al. Bioinformatics. 2014 Jun 15;30(12):i34-42. doi: 10.1093/bioinformatics/btu282. Bioinformatics. 2014. PMID: 24932003 Free PMC article.
Identifying Epistasis in Cancer Genomes: A Delicate Affair.
van de Haar J, Canisius S, Yu MK, Voest EE, Wessels LFA, Ideker T. van de Haar J, et al. Among authors: yu mk. Cell. 2019 May 30;177(6):1375-1383. doi: 10.1016/j.cell.2019.05.005. Cell. 2019. PMID: 31150618 Free PMC article. Review.
Interpretation of cancer mutations using a multiscale map of protein systems.
Zheng F, Kelly MR, Ramms DJ, Heintschel ML, Tao K, Tutuncuoglu B, Lee JJ, Ono K, Foussard H, Chen M, Herrington KA, Silva E, Liu SN, Chen J, Churas C, Wilson N, Kratz A, Pillich RT, Patel DN, Park J, Kuenzi B, Yu MK, Licon K, Pratt D, Kreisberg JF, Kim M, Swaney DL, Nan X, Fraley SI, Gutkind JS, Krogan NJ, Ideker T. Zheng F, et al. Among authors: yu mk. Science. 2021 Oct;374(6563):eabf3067. doi: 10.1126/science.abf3067. Epub 2021 Oct 1. Science. 2021. PMID: 34591613 Free PMC article.
227 results