Johnson WE - Search Results

1

Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility.

Piccolo SR, Hoffman LM, Conner T, Shrestha G, Cohen AL, Marks JR, Neumayer LA, Agarwal CA, Beckerle MC, Andrulis IL, Spira AE, Moos PJ, Buys SS, Johnson WE, Bild AH. Piccolo SR, et al. Among authors: johnson we. Mol Syst Biol. 2016 Mar 10;12(3):860. doi: 10.15252/msb.20156506. Mol Syst Biol. 2016. PMID: 26969729 Free PMC article.

2

A single-sample microarray normalization method to facilitate personalized-medicine workflows.

Piccolo SR, Sun Y, Campbell JD, Lenburg ME, Bild AH, Johnson WE. Piccolo SR, et al. Among authors: johnson we. Genomics. 2012 Dec;100(6):337-44. doi: 10.1016/j.ygeno.2012.08.003. Epub 2012 Aug 19. Genomics. 2012. PMID: 22959562 Free PMC article.

3

Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers.

Cohen AL, Piccolo SR, Cheng L, Soldi R, Han B, Johnson WE, Bild AH. Cohen AL, et al. Among authors: johnson we. BMC Med Genomics. 2013 Sep 30;6:35. doi: 10.1186/1755-8794-6-35. BMC Med Genomics. 2013. PMID: 24079712 Free PMC article.

4

Multiplatform single-sample estimates of transcriptional activation.

Piccolo SR, Withers MR, Francis OE, Bild AH, Johnson WE. Piccolo SR, et al. Among authors: johnson we. Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17778-83. doi: 10.1073/pnas.1305823110. Epub 2013 Oct 15. Proc Natl Acad Sci U S A. 2013. PMID: 24128763 Free PMC article.

5

A field guide to genomics research.

Bild AH, Chang JT, Johnson WE, Piccolo SR. Bild AH, et al. Among authors: johnson we. PLoS Biol. 2014 Jan;12(1):e1001744. doi: 10.1371/journal.pbio.1001744. Epub 2014 Jan 7. PLoS Biol. 2014. PMID: 24409093 Free PMC article.

6

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.

Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Campbell JD, et al. Among authors: johnson we. RNA. 2015 Feb;21(2):164-71. doi: 10.1261/rna.046060.114. Epub 2014 Dec 17. RNA. 2015. PMID: 25519487 Free PMC article.

7

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.

Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE. Shen Y, et al. Among authors: johnson we. Bioinformatics. 2015 Jun 1;31(11):1745-53. doi: 10.1093/bioinformatics/btv031. Epub 2015 Jan 22. Bioinformatics. 2015. PMID: 25617415 Free PMC article.

8

Histone deacetylase 6 (HDAC6) promotes the pro-survival activity of 14-3-3ζ via deacetylation of lysines within the 14-3-3ζ binding pocket.

Mortenson JB, Heppler LN, Banks CJ, Weerasekara VK, Whited MD, Piccolo SR, Johnson WE, Thompson JW, Andersen JL. Mortenson JB, et al. Among authors: johnson we. J Biol Chem. 2015 May 15;290(20):12487-96. doi: 10.1074/jbc.M114.607580. Epub 2015 Mar 13. J Biol Chem. 2015. PMID: 25770209 Free PMC article.

9

Inferring pathway dysregulation in cancers from multiple types of omic data.

MacNeil SM, Johnson WE, Li DY, Piccolo SR, Bild AH. MacNeil SM, et al. Among authors: johnson we. Genome Med. 2015 Jun 26;7(1):61. doi: 10.1186/s13073-015-0189-4. eCollection 2015. Genome Med. 2015. PMID: 26170901 Free PMC article.

10

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results.

Rahman M, Jackson LK, Johnson WE, Li DY, Bild AH, Piccolo SR. Rahman M, et al. Among authors: johnson we. Bioinformatics. 2015 Nov 15;31(22):3666-72. doi: 10.1093/bioinformatics/btv377. Epub 2015 Jul 24. Bioinformatics. 2015. PMID: 26209429 Free PMC article.

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