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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.
Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM. Kolmeder CA, et al. PLoS One. 2016 Apr 12;11(4):e0153294. doi: 10.1371/journal.pone.0153294. eCollection 2016. PLoS One. 2016. PMID: 27070903 Free PMC article. Clinical Trial.
Colonic metaproteomic signatures of active bacteria and the host in obesity.
Kolmeder CA, Ritari J, Verdam FJ, Muth T, Keskitalo S, Varjosalo M, Fuentes S, Greve JW, Buurman WA, Reichl U, Rapp E, Martens L, Palva A, Salonen A, Rensen SS, de Vos WM. Kolmeder CA, et al. Proteomics. 2015 Oct;15(20):3544-52. doi: 10.1002/pmic.201500049. Epub 2015 Sep 11. Proteomics. 2015. PMID: 26255997
Navigating through metaproteomics data: a logbook of database searching.
Muth T, Kolmeder CA, Salojärvi J, Keskitalo S, Varjosalo M, Verdam FJ, Rensen SS, Reichl U, de Vos WM, Rapp E, Martens L. Muth T, et al. Among authors: kolmeder ca. Proteomics. 2015 Oct;15(20):3439-53. doi: 10.1002/pmic.201400560. Epub 2015 Apr 27. Proteomics. 2015. PMID: 25778831
An iterative workflow for mining the human intestinal metaproteome.
Rooijers K, Kolmeder C, Juste C, Doré J, de Been M, Boeren S, Galan P, Beauvallet C, de Vos WM, Schaap PJ. Rooijers K, et al. BMC Genomics. 2011 Jan 5;12:6. doi: 10.1186/1471-2164-12-6. BMC Genomics. 2011. PMID: 21208423 Free PMC article.
Survey of metaproteomics software tools for functional microbiome analysis.
Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. Among authors: kolmeder ca. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.
12 results