Kholodenko BN - Search Results

1

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Sik Lee S, Peter M, Kholodenko BN, Li Jeon N, Pertz O. Ryu H, et al. Among authors: kholodenko bn. Mol Syst Biol. 2016 Apr 22;12(4):866. doi: 10.15252/msb.20166982. Mol Syst Biol. 2016. PMID: 27107015 Free PMC article.

2

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Lee SS, Peter M, Kholodenko BN, Jeon NL, Pertz O. Ryu H, et al. Among authors: kholodenko bn. Mol Syst Biol. 2015 Nov 27;11(11):838. doi: 10.15252/msb.20156458. Mol Syst Biol. 2015. PMID: 26613961 Free PMC article.

3

Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation.

Nguyen LK, Dobrzyński M, Fey D, Kholodenko BN. Nguyen LK, et al. Among authors: kholodenko bn. Front Physiol. 2014 Jan 24;5:4. doi: 10.3389/fphys.2014.00004. eCollection 2014. Front Physiol. 2014. PMID: 24478717 Free PMC article.

4

Performance of objective functions and optimisation procedures for parameter estimation in system biology models.

Degasperi A, Fey D, Kholodenko BN. Degasperi A, et al. Among authors: kholodenko bn. NPJ Syst Biol Appl. 2017 Aug 8;3:20. doi: 10.1038/s41540-017-0023-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28804640 Free PMC article.

5

Modeling of Receptor Tyrosine Kinase Signaling: Computational and Experimental Protocols.

Fey D, Aksamitiene E, Kiyatkin A, Kholodenko BN. Fey D, et al. Among authors: kholodenko bn. Methods Mol Biol. 2017;1636:417-453. doi: 10.1007/978-1-4939-7154-1_27. Methods Mol Biol. 2017. PMID: 28730495

6

Relationship Between Dimensionality and Convergence of Optimization Algorithms: A Comparison Between Data-Driven Normalization and Scaling Factor-Based Methods Using PEPSSBI.

Degasperi A, Nguyen LK, Fey D, Kholodenko BN. Degasperi A, et al. Among authors: kholodenko bn. Methods Mol Biol. 2022;2385:91-115. doi: 10.1007/978-1-0716-1767-0_5. Methods Mol Biol. 2022. PMID: 34888717 Free PMC article.

7

Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise.

Birtwistle MR, Rauch J, Kiyatkin A, Aksamitiene E, Dobrzyński M, Hoek JB, Kolch W, Ogunnaike BA, Kholodenko BN. Birtwistle MR, et al. Among authors: kholodenko bn. BMC Syst Biol. 2012 Aug 24;6:109. doi: 10.1186/1752-0509-6-109. BMC Syst Biol. 2012. PMID: 22920937 Free PMC article.

8

Network-based identification of feedback modules that control RhoA activity and cell migration.

Kim TH, Monsefi N, Song JH, von Kriegsheim A, Vandamme D, Pertz O, Kholodenko BN, Kolch W, Cho KH. Kim TH, et al. Among authors: kholodenko bn. J Mol Cell Biol. 2015 Jun;7(3):242-52. doi: 10.1093/jmcb/mjv017. Epub 2015 Mar 16. J Mol Cell Biol. 2015. PMID: 25780058

9

Control of the G-protein cascade dynamics by GDP dissociation inhibitors.

Nikonova E, Tsyganov MA, Kolch W, Fey D, Kholodenko BN. Nikonova E, et al. Among authors: kholodenko bn. Mol Biosyst. 2013 Oct;9(10):2454-62. doi: 10.1039/c3mb70152b. Mol Biosyst. 2013. PMID: 23872884

10

The complexities and versatility of the RAS-to-ERK signalling system in normal and cancer cells.

Fey D, Matallanas D, Rauch J, Rukhlenko OS, Kholodenko BN. Fey D, et al. Among authors: kholodenko bn. Semin Cell Dev Biol. 2016 Oct;58:96-107. doi: 10.1016/j.semcdb.2016.06.011. Epub 2016 Jun 24. Semin Cell Dev Biol. 2016. PMID: 27350026 Review.

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