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Page 1
Viral genome imaging of hepatitis C virus to probe heterogeneous viral infection and responses to antiviral therapies.
Ramanan V, Trehan K, Ong ML, Luna JM, Hoffmann HH, Espiritu C, Sheahan TP, Chandrasekar H, Schwartz RE, Christine KS, Rice CM, van Oudenaarden A, Bhatia SN. Ramanan V, et al. Among authors: van oudenaarden a. Virology. 2016 Jul;494:236-47. doi: 10.1016/j.virol.2016.04.020. Epub 2016 Apr 27. Virology. 2016. PMID: 27128351 Free PMC article.
Imaging single mRNA molecules in yeast.
Youk H, Raj A, van Oudenaarden A. Youk H, et al. Among authors: van oudenaarden a. Methods Enzymol. 2010;470:429-46. doi: 10.1016/S0076-6879(10)70017-3. Epub 2010 Mar 1. Methods Enzymol. 2010. PMID: 20946820
Validating transcripts with probes and imaging technology.
Itzkovitz S, van Oudenaarden A. Itzkovitz S, et al. Among authors: van oudenaarden a. Nat Methods. 2011 Apr;8(4 Suppl):S12-9. doi: 10.1038/nmeth.1573. Epub 2011 Mar 30. Nat Methods. 2011. PMID: 21451512 Free PMC article. Review.
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.
Bienko M, Crosetto N, Teytelman L, Klemm S, Itzkovitz S, van Oudenaarden A. Bienko M, et al. Among authors: van oudenaarden a. Nat Methods. 2013 Feb;10(2):122-124. doi: 10.1038/nmeth.2306. Epub 2012 Dec 23. Nat Methods. 2013. PMID: 23263692 Free PMC article.
FuseFISH: robust detection of transcribed gene fusions in single cells.
Semrau S, Crosetto N, Bienko M, Boni M, Bernasconi P, Chiarle R, van Oudenaarden A. Semrau S, et al. Among authors: van oudenaarden a. Cell Rep. 2014 Jan 16;6(1):18-23. doi: 10.1016/j.celrep.2013.12.002. Epub 2013 Dec 27. Cell Rep. 2014. PMID: 24373969 Free PMC article.
Integrated genome and transcriptome sequencing of the same cell.
Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A. Dey SS, et al. Among authors: van oudenaarden a. Nat Biotechnol. 2015 Mar;33(3):285-289. doi: 10.1038/nbt.3129. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599178 Free PMC article.
Single-cell messenger RNA sequencing reveals rare intestinal cell types.
Grün D, Lyubimova A, Kester L, Wiebrands K, Basak O, Sasaki N, Clevers H, van Oudenaarden A. Grün D, et al. Among authors: van oudenaarden a. Nature. 2015 Sep 10;525(7568):251-5. doi: 10.1038/nature14966. Epub 2015 Aug 19. Nature. 2015. PMID: 26287467
Genome-wide maps of nuclear lamina interactions in single human cells.
Kind J, Pagie L, de Vries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, de Graaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, van Oudenaarden A, van Steensel B. Kind J, et al. Among authors: van oudenaarden a, van steensel b. Cell. 2015 Sep 24;163(1):134-47. doi: 10.1016/j.cell.2015.08.040. Epub 2015 Sep 10. Cell. 2015. PMID: 26365489 Free PMC article.
Imaging individual mRNA molecules using multiple singly labeled probes.
Raj A, van den Bogaard P, Rifkin SA, van Oudenaarden A, Tyagi S. Raj A, et al. Among authors: van oudenaarden a, van den bogaard p. Nat Methods. 2008 Oct;5(10):877-9. doi: 10.1038/nmeth.1253. Epub 2008 Sep 21. Nat Methods. 2008. PMID: 18806792 Free PMC article.
207 results