Umemura M - Search Results

1

Genome Sequence of Ustilaginoidea virens IPU010, a Rice Pathogenic Fungus Causing False Smut.

Kumagai T, Ishii T, Terai G, Umemura M, Machida M, Asai K. Kumagai T, et al. Among authors: umemura m. Genome Announc. 2016 May 5;4(3):e00306-16. doi: 10.1128/genomeA.00306-16. Genome Announc. 2016. PMID: 27151791 Free PMC article.

2

Genome Sequence of the Mucoromycotina Fungus Umbelopsis isabellina, an Effective Producer of Lipids.

Takeda I, Tamano K, Yamane N, Ishii T, Miura A, Umemura M, Terai G, Baker SE, Koike H, Machida M. Takeda I, et al. Among authors: umemura m. Genome Announc. 2014 Feb 27;2(1):e00071-14. doi: 10.1128/genomeA.00071-14. Genome Announc. 2014. PMID: 24578268 Free PMC article.

3

Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens.

Tsukui T, Nagano N, Umemura M, Kumagai T, Terai G, Machida M, Asai K. Tsukui T, et al. Among authors: umemura m. Bioinformatics. 2015 Apr 1;31(7):981-5. doi: 10.1093/bioinformatics/btu753. Epub 2014 Nov 19. Bioinformatics. 2015. PMID: 25414363

4

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.

5

Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species.

Takeda I, Umemura M, Koike H, Asai K, Machida M. Takeda I, et al. Among authors: umemura m. DNA Res. 2014 Aug;21(4):447-57. doi: 10.1093/dnares/dsu010. Epub 2014 Apr 11. DNA Res. 2014. PMID: 24727546 Free PMC article.

6

Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus.

Umemura M, Nagano N, Koike H, Kawano J, Ishii T, Miyamura Y, Kikuchi M, Tamano K, Yu J, Shin-ya K, Machida M. Umemura M, et al. Fungal Genet Biol. 2014 Jul;68:23-30. doi: 10.1016/j.fgb.2014.04.011. Epub 2014 May 16. Fungal Genet Biol. 2014. PMID: 24841822 Free article.

7

Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data.

Ikegami T, Inatsugi T, Kojima I, Umemura M, Hagiwara H, Machida M, Asai K. Ikegami T, et al. Among authors: umemura m. PLoS One. 2015 Apr 28;10(4):e0126289. doi: 10.1371/journal.pone.0126289. eCollection 2015. PLoS One. 2015. PMID: 25919614 Free PMC article.

8

Class of cyclic ribosomal peptide synthetic genes in filamentous fungi.

Nagano N, Umemura M, Izumikawa M, Kawano J, Ishii T, Kikuchi M, Tomii K, Kumagai T, Yoshimi A, Machida M, Abe K, Shin-Ya K, Asai K. Nagano N, et al. Among authors: umemura m. Fungal Genet Biol. 2016 Jan;86:58-70. doi: 10.1016/j.fgb.2015.12.010. Epub 2015 Dec 15. Fungal Genet Biol. 2016. PMID: 26703898 Free article.

9

Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi.

Umemura M, Koike H, Machida M. Umemura M, et al. Front Microbiol. 2015 May 5;6:371. doi: 10.3389/fmicb.2015.00371. eCollection 2015. Front Microbiol. 2015. PMID: 25999925 Free PMC article. Review.

10

Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

Umemura M, Koyama Y, Takeda I, Hagiwara H, Ikegami T, Koike H, Machida M. Umemura M, et al. PLoS One. 2013 May 7;8(5):e63673. doi: 10.1371/journal.pone.0063673. Print 2013. PLoS One. 2013. PMID: 23667655 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

270 results

Search Page

Filters