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Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).
Kappler U, Davenport K, Beatson S, Lapidus A, Pan C, Han C, Montero-Calasanz Mdel C, Land M, Hauser L, Rohde M, Göker M, Ivanova N, Woyke T, Klenk HP, Kyrpides NC. Kappler U, et al. Among authors: ivanova n. Stand Genomic Sci. 2016 Jun 3;11:38. doi: 10.1186/s40793-016-0162-x. eCollection 2016. Stand Genomic Sci. 2016. PMID: 27274784 Free PMC article.
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000.
Feil H, Feil WS, Chain P, Larimer F, DiBartolo G, Copeland A, Lykidis A, Trong S, Nolan M, Goltsman E, Thiel J, Malfatti S, Loper JE, Lapidus A, Detter JC, Land M, Richardson PM, Kyrpides NC, Ivanova N, Lindow SE. Feil H, et al. Among authors: ivanova n. Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):11064-9. doi: 10.1073/pnas.0504930102. Epub 2005 Jul 25. Proc Natl Acad Sci U S A. 2005. PMID: 16043691 Free PMC article.
The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies.
Mavromatis K, Doyle CK, Lykidis A, Ivanova N, Francino MP, Chain P, Shin M, Malfatti S, Larimer F, Copeland A, Detter JC, Land M, Richardson PM, Yu XJ, Walker DH, McBride JW, Kyrpides NC. Mavromatis K, et al. Among authors: ivanova n. J Bacteriol. 2006 Jun;188(11):4015-23. doi: 10.1128/JB.01837-05. J Bacteriol. 2006. PMID: 16707693 Free PMC article.
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Among authors: ivanova nn. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, Kyrpides NC, Blackall LL, McMahon KD, Hugenholtz P. García Martín H, et al. Among authors: ivanova n. Nat Biotechnol. 2006 Oct;24(10):1263-9. doi: 10.1038/nbt1247. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998472 Free article.
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.
Lykidis A, Mavromatis K, Ivanova N, Anderson I, Land M, DiBartolo G, Martinez M, Lapidus A, Lucas S, Copeland A, Richardson P, Wilson DB, Kyrpides N. Lykidis A, et al. Among authors: ivanova n. J Bacteriol. 2007 Mar;189(6):2477-86. doi: 10.1128/JB.01899-06. Epub 2007 Jan 5. J Bacteriol. 2007. PMID: 17209016 Free PMC article.
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC. Mavromatis K, et al. Among authors: ivanova n. Nat Methods. 2007 Jun;4(6):495-500. doi: 10.1038/nmeth1043. Epub 2007 Apr 29. Nat Methods. 2007. PMID: 17468765 Free article.
IMG/M: a data management and analysis system for metagenomes.
Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, Dalevi D, Chen IM, Grechkin Y, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Hugenholtz P, Kyrpides NC. Markowitz VM, et al. Among authors: ivanova nn. Nucleic Acids Res. 2008 Jan;36(Database issue):D534-8. doi: 10.1093/nar/gkm869. Epub 2007 Oct 11. Nucleic Acids Res. 2008. PMID: 17932063 Free PMC article.
Annotation of metagenome short reads using proxygenes.
Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, Markowitz VM. Dalevi D, et al. Among authors: ivanova nn. Bioinformatics. 2008 Aug 15;24(16):i7-13. doi: 10.1093/bioinformatics/btn276. Bioinformatics. 2008. PMID: 18689842
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.
Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F, Szeto E, Lapidus A, Kyrpides NC, Saier MH Jr, Richardson PM, Rachel R, Huber H, Eisen JA, Koonin EV, Keller M, Stetter KO. Podar M, et al. Among authors: ivanova n. Genome Biol. 2008;9(11):R158. doi: 10.1186/gb-2008-9-11-r158. Epub 2008 Nov 10. Genome Biol. 2008. PMID: 19000309 Free PMC article.
1,261 results