Smith AD - Search Results

1

Enhancers reside in a unique epigenetic environment during early zebrafish development.

Kaaij LJ, Mokry M, Zhou M, Musheev M, Geeven G, Melquiond AS, de Jesus Domingues AM, de Laat W, Niehrs C, Smith AD, Ketting RF. Kaaij LJ, et al. Among authors: smith ad. Genome Biol. 2016 Jul 5;17(1):146. doi: 10.1186/s13059-016-1013-1. Genome Biol. 2016. PMID: 27381023 Free PMC article.

2

Transcription start site evolution in Drosophila.

Main BJ, Smith AD, Jang H, Nuzhdin SV. Main BJ, et al. Among authors: smith ad. Mol Biol Evol. 2013 Aug;30(8):1966-74. doi: 10.1093/molbev/mst085. Epub 2013 May 6. Mol Biol Evol. 2013. PMID: 23649539 Free PMC article.

3

DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus.

Kaaij LT, van de Wetering M, Fang F, Decato B, Molaro A, van de Werken HJ, van Es JH, Schuijers J, de Wit E, de Laat W, Hannon GJ, Clevers HC, Smith AD, Ketting RF. Kaaij LT, et al. Among authors: smith ad. Genome Biol. 2013 May 28;14(5):R50. doi: 10.1186/gb-2013-14-5-r50. Genome Biol. 2013. PMID: 23714178 Free PMC article.

4

MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.

Qu J, Zhou M, Song Q, Hong EE, Smith AD. Qu J, et al. Among authors: smith ad. Bioinformatics. 2013 Oct 15;29(20):2645-6. doi: 10.1093/bioinformatics/btt459. Epub 2013 Aug 21. Bioinformatics. 2013. PMID: 23969133 Free PMC article.

5

A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics.

Song Q, Decato B, Hong EE, Zhou M, Fang F, Qu J, Garvin T, Kessler M, Zhou J, Smith AD. Song Q, et al. Among authors: smith ad. PLoS One. 2013 Dec 6;8(12):e81148. doi: 10.1371/journal.pone.0081148. eCollection 2013. PLoS One. 2013. PMID: 24324667 Free PMC article.

6

Contrasting Levels of Molecular Evolution on the Mouse X Chromosome.

Larson EL, Vanderpool D, Keeble S, Zhou M, Sarver BA, Smith AD, Dean MD, Good JM. Larson EL, et al. Among authors: smith ad. Genetics. 2016 Aug;203(4):1841-57. doi: 10.1534/genetics.116.186825. Epub 2016 Jun 17. Genetics. 2016. PMID: 27317678 Free PMC article.

7

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation.

Delás MJ, Sabin LR, Dolzhenko E, Knott SR, Munera Maravilla E, Jackson BT, Wild SA, Kovacevic T, Stork EM, Zhou M, Erard N, Lee E, Kelley DR, Roth M, Barbosa IA, Zuber J, Rinn JL, Smith AD, Hannon GJ. Delás MJ, et al. Among authors: smith ad. Elife. 2017 Sep 6;6:e25607. doi: 10.7554/eLife.25607. Elife. 2017. PMID: 28875933 Free PMC article.

8

Evolutionary expansion of DNA hypomethylation in the mammalian germline genome.

Qu J, Hodges E, Molaro A, Gagneux P, Dean MD, Hannon GJ, Smith AD. Qu J, et al. Among authors: smith ad. Genome Res. 2018 Feb;28(2):145-158. doi: 10.1101/gr.225896.117. Epub 2017 Dec 19. Genome Res. 2018. PMID: 29259021 Free PMC article.

9

Subtype classification and functional annotation of L1Md retrotransposon promoters.

Zhou M, Smith AD. Zhou M, et al. Among authors: smith ad. Mob DNA. 2019 Apr 8;10:14. doi: 10.1186/s13100-019-0156-5. eCollection 2019. Mob DNA. 2019. PMID: 31007728 Free PMC article.

10

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs.

Barrera LO, Li Z, Smith AD, Arden KC, Cavenee WK, Zhang MQ, Green RD, Ren B. Barrera LO, et al. Among authors: smith ad. Genome Res. 2008 Jan;18(1):46-59. doi: 10.1101/gr.6654808. Epub 2007 Nov 27. Genome Res. 2008. PMID: 18042645 Free PMC article.

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