Ruan J - Search Results

1

A novel algorithm for network-based prediction of cancer recurrence.

Ruan J, Jahid MJ, Gu F, Lei C, Huang YW, Hsu YT, Mutch DG, Chen CL, Kirma NB, Huang TH. Ruan J, et al. Genomics. 2019 Jan;111(1):17-23. doi: 10.1016/j.ygeno.2016.07.005. Epub 2016 Jul 21. Genomics. 2019. PMID: 27453286 Free PMC article.

2

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

Ruan J, Deng Y, Perkins EJ, Zhang W. Ruan J, et al. BMC Genomics. 2009 Jul 7;10 Suppl 1(Suppl 1):S8. doi: 10.1186/1471-2164-10-S1-S8. BMC Genomics. 2009. PMID: 19594885 Free PMC article.

3

A novel swarm intelligence algorithm for finding DNA motifs.

Lei C, Ruan J. Lei C, et al. Among authors: ruan j. Int J Comput Biol Drug Des. 2009;2(4):323-39. doi: 10.1504/IJCBDD.2009.030764. Epub 2009 Jan 4. Int J Comput Biol Drug Des. 2009. PMID: 20090174 Free PMC article.

4

A top-performing algorithm for the DREAM3 gene expression prediction challenge.

Ruan J. Ruan J. PLoS One. 2010 Feb 4;5(2):e8944. doi: 10.1371/journal.pone.0008944. PLoS One. 2010. PMID: 20140212 Free PMC article.

5

A particle swarm optimization-based algorithm for finding gapped motifs.

Lei C, Ruan J. Lei C, et al. Among authors: ruan j. BioData Min. 2010 Dec 13;3:9. doi: 10.1186/1756-0381-3-9. BioData Min. 2010. PMID: 21144057 Free PMC article.

6

Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth.

Sun J, Pan H, Lei C, Yuan B, Nair SJ, April C, Parameswaran B, Klotzle B, Fan JB, Ruan J, Li R. Sun J, et al. Among authors: ruan j. J Biol Chem. 2011 Oct 21;286(42):36248-57. doi: 10.1074/jbc.M111.269167. Epub 2011 Aug 24. J Biol Chem. 2011. PMID: 21865163 Free PMC article.

7

Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana.

Ruan J, Perez J, Hernandez B, Lei C, Sunter G, Sponsel VM. Ruan J, et al. BMC Bioinformatics. 2011 Nov 24;12 Suppl 12(Suppl 12):S2. doi: 10.1186/1471-2105-12-S12-S2. BMC Bioinformatics. 2011. PMID: 22168340 Free PMC article.

8

A Steiner tree-based method for biomarker discovery and classification in breast cancer metastasis.

Jahid MJ, Ruan J. Jahid MJ, et al. Among authors: ruan j. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S8. doi: 10.1186/1471-2164-13-S6-S8. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134806 Free PMC article.

9

A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.

Lei C, Ruan J. Lei C, et al. Among authors: ruan j. Bioinformatics. 2013 Feb 1;29(3):355-64. doi: 10.1093/bioinformatics/bts688. Epub 2012 Dec 11. Bioinformatics. 2013. PMID: 23235927 Free PMC article.

10

A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks.

Gao Z, Zhao R, Ruan J. Gao Z, et al. Among authors: ruan j. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S4. doi: 10.1186/1471-2164-14-S1-S4. Epub 2013 Jan 21. BMC Genomics. 2013. PMID: 23368633 Free PMC article.

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