Heiner M - Search Results

1

A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease.

Somekh J, Peleg M, Eran A, Koren I, Feiglin A, Demishtein A, Shiloh R, Heiner M, Kong SW, Elazar Z, Kohane I. Somekh J, et al. Among authors: heiner m. J Biomed Inform. 2016 Oct;63:366-378. doi: 10.1016/j.jbi.2016.08.008. Epub 2016 Aug 10. J Biomed Inform. 2016. PMID: 27522000 Free PMC article.

2

Fuzzy Stochastic Petri Nets for Modeling Biological Systems with Uncertain Kinetic Parameters.

Liu F, Heiner M, Yang M. Liu F, et al. Among authors: heiner m. PLoS One. 2016 Feb 24;11(2):e0149674. doi: 10.1371/journal.pone.0149674. eCollection 2016. PLoS One. 2016. PMID: 26910830 Free PMC article.

3

Coloured Hybrid Petri Nets: An adaptable modelling approach for multi-scale biological networks.

Herajy M, Liu F, Rohr C, Heiner M. Herajy M, et al. Among authors: heiner m. Comput Biol Chem. 2018 Oct;76:87-100. doi: 10.1016/j.compbiolchem.2018.05.023. Epub 2018 May 28. Comput Biol Chem. 2018. PMID: 29982167

4

Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking.

Gilbert D, Heiner M, Ghanbar L, Chodak J. Gilbert D, et al. Among authors: heiner m. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):173. doi: 10.1186/s12859-019-2690-z. BMC Bioinformatics. 2019. PMID: 30999841 Free PMC article.

5

BioModel engineering for multiscale Systems Biology.

Heiner M, Gilbert D. Heiner M, et al. Prog Biophys Mol Biol. 2013 Apr;111(2-3):119-28. doi: 10.1016/j.pbiomolbio.2012.10.001. Epub 2012 Oct 12. Prog Biophys Mol Biol. 2013. PMID: 23067820 Free article.

6

A Petri nets-based framework for whole-cell modeling.

Liu F, Assaf G, Chen M, Heiner M. Liu F, et al. Among authors: heiner m. Biosystems. 2021 Dec;210:104533. doi: 10.1016/j.biosystems.2021.104533. Epub 2021 Sep 17. Biosystems. 2021. PMID: 34543693

7

Model validation of biological pathways using Petri nets--demonstrated for apoptosis.

Heiner M, Koch I, Will J. Heiner M, et al. Biosystems. 2004 Jul;75(1-3):15-28. doi: 10.1016/j.biosystems.2004.03.003. Biosystems. 2004. PMID: 15245801

8

Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models.

Herajy M, Liu F, Rohr C, Heiner M. Herajy M, et al. Among authors: heiner m. BMC Syst Biol. 2017 Jul 28;11(1):71. doi: 10.1186/s12918-017-0449-6. BMC Syst Biol. 2017. PMID: 28754122 Free PMC article.

9

Hybrid modelling of biological systems using fuzzy continuous Petri nets.

Liu F, Sun W, Heiner M, Gilbert D. Liu F, et al. Among authors: heiner m. Brief Bioinform. 2021 Jan 18;22(1):438-450. doi: 10.1093/bib/bbz114. Brief Bioinform. 2021. PMID: 33480420 Free PMC article.

10

Structural analysis to determine the core of hypoxia response network.

Heiner M, Sriram K. Heiner M, et al. PLoS One. 2010 Jan 19;5(1):e8600. doi: 10.1371/journal.pone.0008600. PLoS One. 2010. PMID: 20098728 Free PMC article.

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