Pérez-Rueda E - Search Results

1

Identification and in silico characterization of two novel genes encoding peptidases S8 found by functional screening in a metagenomic library of Yucatán underground water.

Apolinar-Hernández MM, Peña-Ramírez YJ, Pérez-Rueda E, Canto-Canché BB, De Los Santos-Briones C, O'Connor-Sánchez A. Apolinar-Hernández MM, et al. Gene. 2016 Nov 15;593(1):154-161. doi: 10.1016/j.gene.2016.08.009. Epub 2016 Aug 10. Gene. 2016. PMID: 27522038

2

The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds.

Costa MOCE, do Nascimento APB, Martins YC, Dos Santos MT, Figueiredo AMS, Perez-Rueda E, Nicolás MF. Costa MOCE, et al. Front Microbiol. 2023 Jan 10;13:1049819. doi: 10.3389/fmicb.2022.1049819. eCollection 2022. Front Microbiol. 2023. PMID: 36704545 Free PMC article.

3

Editorial: Role of transcription factors and sigma factors in bacterial stress physiology.

Perez-Rueda E, Schellhorn HE, Kumar S. Perez-Rueda E, et al. Front Microbiol. 2023 Oct 6;14:1291172. doi: 10.3389/fmicb.2023.1291172. eCollection 2023. Front Microbiol. 2023. PMID: 37869661 Free PMC article. No abstract available.

4

CDBProm: the Comprehensive Directory of Bacterial Promoters.

Martinez GS, Perez-Rueda E, Kumar A, Dutt M, Maya CR, Ledesma-Dominguez L, Casa PL, Kumar A, de Avila E Silva S, Kelvin DJ. Martinez GS, et al. Among authors: perez rueda e. NAR Genom Bioinform. 2024 Feb 21;6(1):lqae018. doi: 10.1093/nargab/lqae018. eCollection 2024 Mar. NAR Genom Bioinform. 2024. PMID: 38385146 Free PMC article.

5

Comparative genomics sheds light on transcription factor-mediated regulation in the extreme acidophilic Acidithiobacillia representatives.

Sepúlveda-Rebolledo P, González-Rosales C, Dopson M, Pérez-Rueda E, Holmes DS, Valdés JH. Sepúlveda-Rebolledo P, et al. Res Microbiol. 2024 Jan-Feb;175(1-2):104135. doi: 10.1016/j.resmic.2023.104135. Epub 2023 Sep 9. Res Microbiol. 2024. PMID: 37678513 Free article.

6

Explainable artificial intelligence as a reliable annotator of archaeal promoter regions.

Sganzerla Martinez G, Perez-Rueda E, Kumar A, Sarkar S, de Avila E Silva S. Sganzerla Martinez G, et al. Sci Rep. 2023 Jan 31;13(1):1763. doi: 10.1038/s41598-023-28571-7. Sci Rep. 2023. PMID: 36720898 Free PMC article.

7

Editorial: Insights in evolutionary & genomic microbiology: 2022.

Perez-Rueda E, Gao F. Perez-Rueda E, et al. Front Microbiol. 2023 Aug 21;14:1269933. doi: 10.3389/fmicb.2023.1269933. eCollection 2023. Front Microbiol. 2023. PMID: 37670986 Free PMC article. No abstract available.

8

Analysis of carbohydrate-active enzymes and sugar transporters in Penicillium echinulatum: A genome-wide comparative study of the fungal lignocellulolytic system.

Lenz AR, Balbinot E, Souza de Oliveira N, Abreu FP, Casa PL, Camassola M, Perez-Rueda E, de Avila E Silva S, Dillon AJP. Lenz AR, et al. Gene. 2022 May 15;822:146345. doi: 10.1016/j.gene.2022.146345. Epub 2022 Feb 18. Gene. 2022. PMID: 35189252 Free article.

9

Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples.

Tenorio-Salgado S, Castelán-Sánchez HG, Dávila-Ramos S, Huerta-Saquero A, Rodríguez-Morales S, Merino-Pérez E, Roa de la Fuente LF, Solis-Pereira SE, Pérez-Rueda E, Lizama-Uc G. Tenorio-Salgado S, et al. Microbiologyopen. 2021 Mar;10(2):e1183. doi: 10.1002/mbo3.1183. Microbiologyopen. 2021. PMID: 33970536 Free PMC article.

10

Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics.

Brambila-Tapia AJ, Poot-Hernández AC, Perez-Rueda E, Rodríguez-Vázquez K. Brambila-Tapia AJ, et al. Indian J Microbiol. 2016 Jun;56(2):134-41. doi: 10.1007/s12088-015-0562-4. Epub 2015 Dec 31. Indian J Microbiol. 2016. PMID: 27570304 Free PMC article.

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