Ghaemi Z - Search Results

1

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State.

Ghaemi Z, Guzman I, Baek JU, Gruebele M, Luthey-Schulten Z. Ghaemi Z, et al. J Chem Theory Comput. 2016 Sep 13;12(9):4593-9. doi: 10.1021/acs.jctc.6b00418. Epub 2016 Sep 1. J Chem Theory Comput. 2016. PMID: 27529183

2

Native conformational dynamics of the spliceosomal U1A protein.

Guzman I, Ghaemi Z, Baranger A, Luthey-Schulten Z, Gruebele M. Guzman I, et al. Among authors: ghaemi z. J Phys Chem B. 2015 Mar 5;119(9):3651-61. doi: 10.1021/jp511760m. Epub 2015 Feb 24. J Phys Chem B. 2015. PMID: 25659967

3

Analysis of the Resistance Mechanism of a Benzoxaborole Inhibitor Reveals Insight into the Leucyl-tRNA Synthetase Editing Mechanism.

Zhao H, Palencia A, Seiradake E, Ghaemi Z, Cusack S, Luthey-Schulten Z, Martinis S. Zhao H, et al. Among authors: ghaemi z. ACS Chem Biol. 2015 Oct 16;10(10):2277-85. doi: 10.1021/acschembio.5b00291. Epub 2015 Jul 31. ACS Chem Biol. 2015. PMID: 26172575

4

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape.

Ghaemi Z, Guzman I, Gnutt D, Luthey-Schulten Z, Gruebele M. Ghaemi Z, et al. J Phys Chem B. 2017 Sep 14;121(36):8437-8446. doi: 10.1021/acs.jpcb.7b04318. Epub 2017 Aug 31. J Phys Chem B. 2017. PMID: 28806086 Free PMC article.

5

The Conformational Change in Elongation Factor Tu Involves Separation of Its Domains.

Lai J, Ghaemi Z, Luthey-Schulten Z. Lai J, et al. Among authors: ghaemi z. Biochemistry. 2017 Nov 14;56(45):5972-5979. doi: 10.1021/acs.biochem.7b00591. Epub 2017 Oct 27. Biochemistry. 2017. PMID: 29045140

6

An in-silico human cell model reveals the influence of spatial organization on RNA splicing.

Ghaemi Z, Peterson JR, Gruebele M, Luthey-Schulten Z. Ghaemi Z, et al. PLoS Comput Biol. 2020 Mar 25;16(3):e1007717. doi: 10.1371/journal.pcbi.1007717. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32210422 Free PMC article.

7

Molecular mechanism of capsid disassembly in hepatitis B virus.

Ghaemi Z, Gruebele M, Tajkhorshid E. Ghaemi Z, et al. Proc Natl Acad Sci U S A. 2021 Sep 7;118(36):e2102530118. doi: 10.1073/pnas.2102530118. Proc Natl Acad Sci U S A. 2021. PMID: 34465620 Free PMC article.

8

Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM.

Gopan G, Ghaemi Z, Davis CM, Gruebele M. Gopan G, et al. Among authors: ghaemi z. Nucleic Acids Res. 2022 Aug 12;50(14):8193-8206. doi: 10.1093/nar/gkac599. Nucleic Acids Res. 2022. PMID: 35876068 Free PMC article.

9

A computational spatial whole-Cell model for hepatitis B viral infection and drug interactions.

Ghaemi Z, Nafiu O, Tajkhorshid E, Gruebele M, Hu J. Ghaemi Z, et al. Sci Rep. 2023 Dec 4;13(1):21392. doi: 10.1038/s41598-023-45998-0. Sci Rep. 2023. PMID: 38049515 Free PMC article.

10

Permeability Coefficients of Lipophilic Compounds Estimated by Computer Simulations.

Ghaemi Z, Alberga D, Carloni P, Laio A, Lattanzi G. Ghaemi Z, et al. J Chem Theory Comput. 2016 Aug 9;12(8):4093-9. doi: 10.1021/acs.jctc.5b01126. Epub 2016 Jul 20. J Chem Theory Comput. 2016. PMID: 27392273

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