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Application of asymmetric statistical potentials to antibody-protein docking.
Brenke R, Hall DR, Chuang GY, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Brenke R, et al. Among authors: hall dr. Bioinformatics. 2012 Oct 15;28(20):2608-14. doi: 10.1093/bioinformatics/bts493. Bioinformatics. 2012. PMID: 23053206 Free PMC article.
Sampling and scoring: a marriage made in heaven.
Vajda S, Hall DR, Kozakov D. Vajda S, et al. Among authors: hall dr. Proteins. 2013 Nov;81(11):1874-84. doi: 10.1002/prot.24343. Epub 2013 Aug 19. Proteins. 2013. PMID: 23775627 Free PMC article. Review.
How good is automated protein docking?
Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. Kozakov D, et al. Among authors: hall dr. Proteins. 2013 Dec;81(12):2159-66. doi: 10.1002/prot.24403. Epub 2013 Oct 17. Proteins. 2013. PMID: 23996272 Free PMC article.
New additions to the ClusPro server motivated by CAPRI.
Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. Vajda S, et al. Among authors: hall dr. Proteins. 2017 Mar;85(3):435-444. doi: 10.1002/prot.25219. Epub 2017 Jan 5. Proteins. 2017. PMID: 27936493 Free PMC article.
The ClusPro web server for protein-protein docking.
Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. Kozakov D, et al. Among authors: hall dr. Nat Protoc. 2017 Feb;12(2):255-278. doi: 10.1038/nprot.2016.169. Epub 2017 Jan 12. Nat Protoc. 2017. PMID: 28079879 Free PMC article.
Protein-ligand docking using FFT based sampling: D3R case study.
Padhorny D, Hall DR, Mirzaei H, Mamonov AB, Moghadasi M, Alekseenko A, Beglov D, Kozakov D. Padhorny D, et al. Among authors: hall dr. J Comput Aided Mol Des. 2018 Jan;32(1):225-230. doi: 10.1007/s10822-017-0069-7. Epub 2017 Nov 3. J Comput Aided Mol Des. 2018. PMID: 29101520 Free PMC article.
Structural conservation of druggable hot spots in protein-protein interfaces.
Kozakov D, Hall DR, Chuang GY, Cencic R, Brenke R, Grove LE, Beglov D, Pelletier J, Whitty A, Vajda S. Kozakov D, et al. Among authors: hall dr. Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13528-33. doi: 10.1073/pnas.1101835108. Epub 2011 Aug 1. Proc Natl Acad Sci U S A. 2011. PMID: 21808046 Free PMC article.
297 results