Vajda S - Search Results

1

ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking.

Yueh C, Hall DR, Xia B, Padhorny D, Kozakov D, Vajda S. Yueh C, et al. Among authors: vajda s. J Mol Biol. 2017 Feb 3;429(3):372-381. doi: 10.1016/j.jmb.2016.10.019. Epub 2016 Oct 19. J Mol Biol. 2017. PMID: 27771482 Free PMC article.

2

Computing the structure of bound peptides. Application to antigen recognition by class I major histocompatibility complex receptors.

Rosenfeld R, Zheng Q, Vajda S, DeLisi C. Rosenfeld R, et al. Among authors: vajda s. J Mol Biol. 1993 Dec 5;234(3):515-21. doi: 10.1006/jmbi.1993.1607. J Mol Biol. 1993. PMID: 8254656

3

Conformational filtering in polypeptides and proteins.

Vajda S. Vajda S. J Mol Biol. 1993 Jan 5;229(1):125-45. doi: 10.1006/jmbi.1993.1013. J Mol Biol. 1993. PMID: 8421296 Free article.

4

Protein docking along smooth association pathways.

Camacho CJ, Vajda S. Camacho CJ, et al. Among authors: vajda s. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10636-41. doi: 10.1073/pnas.181147798. Epub 2001 Aug 21. Proc Natl Acad Sci U S A. 2001. PMID: 11517309 Free PMC article.

5

Protein-protein association kinetics and protein docking.

Camacho CJ, Vajda S. Camacho CJ, et al. Among authors: vajda s. Curr Opin Struct Biol. 2002 Feb;12(1):36-40. doi: 10.1016/s0959-440x(02)00286-5. Curr Opin Struct Biol. 2002. PMID: 11839487 Review.

6

Identification of substrate binding sites in enzymes by computational solvent mapping.

Silberstein M, Dennis S, Brown L, Kortvelyesi T, Clodfelter K, Vajda S. Silberstein M, et al. Among authors: vajda s. J Mol Biol. 2003 Oct 3;332(5):1095-113. doi: 10.1016/j.jmb.2003.08.019. J Mol Biol. 2003. PMID: 14499612

7

Combination of scoring functions improves discrimination in protein-protein docking.

Murphy J, Gatchell DW, Prasad JC, Vajda S. Murphy J, et al. Among authors: vajda s. Proteins. 2003 Dec 1;53(4):840-54. doi: 10.1002/prot.10473. Proteins. 2003. PMID: 14635126

8

ClusPro: an automated docking and discrimination method for the prediction of protein complexes.

Comeau SR, Gatchell DW, Vajda S, Camacho CJ. Comeau SR, et al. Among authors: vajda s. Bioinformatics. 2004 Jan 1;20(1):45-50. doi: 10.1093/bioinformatics/btg371. Bioinformatics. 2004. PMID: 14693807

9

ClusPro: a fully automated algorithm for protein-protein docking.

Comeau SR, Gatchell DW, Vajda S, Camacho CJ. Comeau SR, et al. Among authors: vajda s. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W96-9. doi: 10.1093/nar/gkh354. Nucleic Acids Res. 2004. PMID: 15215358 Free PMC article.

10

Optimal clustering for detecting near-native conformations in protein docking.

Kozakov D, Clodfelter KH, Vajda S, Camacho CJ. Kozakov D, et al. Among authors: vajda s. Biophys J. 2005 Aug;89(2):867-75. doi: 10.1529/biophysj.104.058768. Epub 2005 May 20. Biophys J. 2005. PMID: 15908573 Free PMC article.

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