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The ImageJ ecosystem: An open platform for biomedical image analysis.
Schindelin J, Rueden CT, Hiner MC, Eliceiri KW. Schindelin J, et al. Among authors: hiner mc. Mol Reprod Dev. 2015 Jul-Aug;82(7-8):518-29. doi: 10.1002/mrd.22489. Epub 2015 Jul 7. Mol Reprod Dev. 2015. PMID: 26153368 Free PMC article. Review.
Quantitating the cell: turning images into numbers with ImageJ.
Arena ET, Rueden CT, Hiner MC, Wang S, Yuan M, Eliceiri KW. Arena ET, et al. Among authors: hiner mc. Wiley Interdiscip Rev Dev Biol. 2017 Mar;6(2). doi: 10.1002/wdev.260. Epub 2016 Dec 2. Wiley Interdiscip Rev Dev Biol. 2017. PMID: 27911038 Review.
ImageJ2: ImageJ for the next generation of scientific image data.
Rueden CT, Schindelin J, Hiner MC, DeZonia BE, Walter AE, Arena ET, Eliceiri KW. Rueden CT, et al. Among authors: hiner mc. BMC Bioinformatics. 2017 Nov 29;18(1):529. doi: 10.1186/s12859-017-1934-z. BMC Bioinformatics. 2017. PMID: 29187165 Free PMC article.
New Extensibility and Scripting Tools in the ImageJ Ecosystem.
Gahm NA, Rueden CT, Evans EL 3rd, Selzer G, Hiner MC, Chacko JV, Gao D, Sherer NM, Eliceiri KW. Gahm NA, et al. Among authors: hiner mc. Curr Protoc. 2021 Aug;1(8):e204. doi: 10.1002/cpz1.204. Curr Protoc. 2021. PMID: 34370407 Free PMC article.
PyImageJ: A library for integrating ImageJ and Python.
Rueden CT, Hiner MC, Evans EL 3rd, Pinkert MA, Lucas AM, Carpenter AE, Cimini BA, Eliceiri KW. Rueden CT, et al. Among authors: hiner mc. Nat Methods. 2022 Nov;19(11):1326-1327. doi: 10.1038/s41592-022-01655-4. Nat Methods. 2022. PMID: 36253645 Free PMC article. No abstract available.
napari-imagej: ImageJ ecosystem access from napari.
Selzer GJ, Rueden CT, Hiner MC, Evans EL 3rd, Harrington KIS, Eliceiri KW. Selzer GJ, et al. Among authors: hiner mc. Nat Methods. 2023 Oct;20(10):1443-1444. doi: 10.1038/s41592-023-01990-0. Nat Methods. 2023. PMID: 37596471 Free PMC article. No abstract available.
CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools.
Weisbart E, Tromans-Coia C, Diaz-Rohrer B, Stirling DR, Garcia-Fossa F, Senft RA, Hiner MC, de Jesus MB, Eliceiri KW, Cimini BA. Weisbart E, et al. Among authors: hiner mc. ArXiv [Preprint]. 2023 Aug 15:arXiv:2306.01915v2. ArXiv. 2023. Update in: J Microsc. 2024 Dec;296(3):227-234. doi: 10.1111/jmi.13223 PMID: 37645041 Free PMC article. Updated. Preprint.
12 results