Donald BR - Search Results

1

OSPREY Predicts Resistance Mutations Using Positive and Negative Computational Protein Design.

Ojewole A, Lowegard A, Gainza P, Reeve SM, Georgiev I, Anderson AC, Donald BR. Ojewole A, et al. Among authors: donald br. Methods Mol Biol. 2017;1529:291-306. doi: 10.1007/978-1-4939-6637-0_15. Methods Mol Biol. 2017. PMID: 27914058 Free PMC article.

2

Phylogenetic classification of protozoa based on the structure of the linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate synthase.

O'Neil RH, Lilien RH, Donald BR, Stroud RM, Anderson AC. O'Neil RH, et al. Among authors: donald br. J Biol Chem. 2003 Dec 26;278(52):52980-7. doi: 10.1074/jbc.M310328200. Epub 2003 Oct 9. J Biol Chem. 2003. PMID: 14555647 Free article.

3

The crystal structure of dihydrofolate reductase-thymidylate synthase from Cryptosporidium hominis reveals a novel architecture for the bifunctional enzyme.

O'Neil RH, Lilien RH, Donald BR, Stroud RM, Anderson AC. O'Neil RH, et al. Among authors: donald br. J Eukaryot Microbiol. 2003;50 Suppl:555-6. doi: 10.1111/j.1550-7408.2003.tb00627.x. J Eukaryot Microbiol. 2003. PMID: 14736160 No abstract available.

4

A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry.

Lilien RH, Bailey-Kellogg C, Anderson AC, Donald BR. Lilien RH, et al. Among authors: donald br. Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1057-67. doi: 10.1107/S090744490400695X. Epub 2004 May 21. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15159565

5

A novel ensemble-based scoring and search algorithm for protein redesign and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.

Lilien RH, Stevens BW, Anderson AC, Donald BR. Lilien RH, et al. Among authors: donald br. J Comput Biol. 2005 Jul-Aug;12(6):740-61. doi: 10.1089/cmb.2005.12.740. J Comput Biol. 2005. PMID: 16108714

6

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469

7

Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity.

Stevens BW, Lilien RH, Georgiev I, Donald BR, Anderson AC. Stevens BW, et al. Among authors: donald br. Biochemistry. 2006 Dec 26;45(51):15495-504. doi: 10.1021/bi061788m. Epub 2006 Dec 19. Biochemistry. 2006. PMID: 17176071

8

Dead-end elimination with backbone flexibility.

Georgiev I, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2007 Jul 1;23(13):i185-94. doi: 10.1093/bioinformatics/btm197. Bioinformatics. 2007. PMID: 17646295

9

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

10

Algorithm for backrub motions in protein design.

Georgiev I, Keedy D, Richardson JS, Richardson DC, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2008 Jul 1;24(13):i196-204. doi: 10.1093/bioinformatics/btn169. Bioinformatics. 2008. PMID: 18586714 Free PMC article.

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