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Simultaneous dimension reduction and adjustment for confounding variation.
Lin Z, Yang C, Zhu Y, Duchi J, Fu Y, Wang Y, Jiang B, Zamanighomi M, Xu X, Li M, Sestan N, Zhao H, Wong WH. Lin Z, et al. Among authors: zhu y. Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14662-14667. doi: 10.1073/pnas.1617317113. Epub 2016 Dec 7. Proc Natl Acad Sci U S A. 2016. PMID: 27930330 Free PMC article.
Spatio-temporal transcriptome of the human brain.
Kang HJ, Kawasawa YI, Cheng F, Zhu Y, Xu X, Li M, Sousa AM, Pletikos M, Meyer KA, Sedmak G, Guennel T, Shin Y, Johnson MB, Krsnik Z, Mayer S, Fertuzinhos S, Umlauf S, Lisgo SN, Vortmeyer A, Weinberger DR, Mane S, Hyde TM, Huttner A, Reimers M, Kleinman JE, Sestan N. Kang HJ, et al. Among authors: zhu y. Nature. 2011 Oct 26;478(7370):483-9. doi: 10.1038/nature10523. Nature. 2011. PMID: 22031440 Free PMC article.
Spatiotemporal transcriptomic divergence across human and macaque brain development.
Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Imamura Kawasawa Y, Zhao H, Sestan N. Zhu Y, et al. Science. 2018 Dec 14;362(6420):eaat8077. doi: 10.1126/science.aat8077. Epub 2018 Dec 13. Science. 2018. PMID: 30545855 Free PMC article.
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.
Willsey AJ, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, Gockley J, Gupta AR, Han W, He X, Hoffman EJ, Klei L, Lei J, Liu W, Liu L, Lu C, Xu X, Zhu Y, Mane SM, Lein ES, Wei L, Noonan JP, Roeder K, Devlin B, Sestan N, State MW. Willsey AJ, et al. Among authors: zhu y. Cell. 2013 Nov 21;155(5):997-1007. doi: 10.1016/j.cell.2013.10.020. Cell. 2013. PMID: 24267886 Free PMC article.
Molecular and cellular reorganization of neural circuits in the human lineage.
Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edler MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Hyde TM, Kleinman JE, Weinberger DR, Reimers M, Lifton RP, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N. Sousa AMM, et al. Among authors: zhu y. Science. 2017 Nov 24;358(6366):1027-1032. doi: 10.1126/science.aan3456. Science. 2017. PMID: 29170230 Free PMC article.
Zika Virus Disrupts Phospho-TBK1 Localization and Mitosis in Human Neuroepithelial Stem Cells and Radial Glia.
Onorati M, Li Z, Liu F, Sousa AMM, Nakagawa N, Li M, Dell'Anno MT, Gulden FO, Pochareddy S, Tebbenkamp ATN, Han W, Pletikos M, Gao T, Zhu Y, Bichsel C, Varela L, Szigeti-Buck K, Lisgo S, Zhang Y, Testen A, Gao XB, Mlakar J, Popovic M, Flamand M, Strittmatter SM, Kaczmarek LK, Anton ES, Horvath TL, Lindenbach BD, Sestan N. Onorati M, et al. Among authors: zhu y. Cell Rep. 2016 Sep 6;16(10):2576-2592. doi: 10.1016/j.celrep.2016.08.038. Epub 2016 Aug 24. Cell Rep. 2016. PMID: 27568284 Free PMC article.
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