Bates PA - Search Results

1

A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.

Pfeiffenberger E, Chaleil RA, Moal IH, Bates PA. Pfeiffenberger E, et al. Among authors: bates pa. Proteins. 2017 Mar;85(3):528-543. doi: 10.1002/prot.25218. Epub 2017 Jan 20. Proteins. 2017. PMID: 27935158 Free PMC article.

2

Model building by comparison: a combination of expert knowledge and computer automation.

Bates PA, Jackson RM, Sternberg MJ. Bates PA, et al. Proteins. 1997;Suppl 1:59-67. doi: 10.1002/(sici)1097-0134(1997)1+<59::aid-prot9>3.3.co;2-k. Proteins. 1997. PMID: 9485496

3

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

Bates PA, Kelley LA, MacCallum RM, Sternberg MJ. Bates PA, et al. Proteins. 2001;Suppl 5:39-46. doi: 10.1002/prot.1168. Proteins. 2001. PMID: 11835480

4

Guided docking: first step to locate potential binding sites.

Fitzjohn PW, Bates PA. Fitzjohn PW, et al. Among authors: bates pa. Proteins. 2003 Jul 1;52(1):28-32. doi: 10.1002/prot.10380. Proteins. 2003. PMID: 12784364

5

Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space.

Contreras-Moreira B, Fitzjohn PW, Offman M, Smith GR, Bates PA. Contreras-Moreira B, et al. Among authors: bates pa. Proteins. 2003;53 Suppl 6:424-9. doi: 10.1002/prot.10549. Proteins. 2003. PMID: 14579331

6

Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.

Smith GR, Fitzjohn PW, Page CS, Bates PA. Smith GR, et al. Among authors: bates pa. Proteins. 2005 Aug 1;60(2):263-8. doi: 10.1002/prot.20568. Proteins. 2005. PMID: 15981258

7

Flexible relaxation of rigid-body docking solutions.

Król M, Tournier AL, Bates PA. Król M, et al. Among authors: bates pa. Proteins. 2007 Jul 1;68(1):159-69. doi: 10.1002/prot.21391. Proteins. 2007. PMID: 17397060

8

Implicit flexibility in protein docking: cross-docking and local refinement.

Król M, Chaleil RA, Tournier AL, Bates PA. Król M, et al. Among authors: bates pa. Proteins. 2007 Dec 1;69(4):750-7. doi: 10.1002/prot.21698. Proteins. 2007. PMID: 17671977

9

Detection and refinement of encounter complexes for protein-protein docking: taking account of macromolecular crowding.

Li X, Moal IH, Bates PA. Li X, et al. Among authors: bates pa. Proteins. 2010 Nov 15;78(15):3189-96. doi: 10.1002/prot.22770. Proteins. 2010. PMID: 20552581

10

SwarmDock and the use of normal modes in protein-protein docking.

Moal IH, Bates PA. Moal IH, et al. Among authors: bates pa. Int J Mol Sci. 2010 Sep 28;11(10):3623-48. doi: 10.3390/ijms11103623. Int J Mol Sci. 2010. PMID: 21152290 Free PMC article.

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