Cotten M - Search Results

1

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes.

Dolle DD, Liu Z, Cotten M, Simpson JT, Iqbal Z, Durbin R, McCarthy SA, Keane TM. Dolle DD, et al. Among authors: cotten m. Genome Res. 2017 Feb;27(2):300-309. doi: 10.1101/gr.211748.116. Epub 2016 Dec 16. Genome Res. 2017. PMID: 27986821 Free PMC article.

2

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.

Gall A, Ferns B, Morris C, Watson S, Cotten M, Robinson M, Berry N, Pillay D, Kellam P. Gall A, et al. Among authors: cotten m. J Clin Microbiol. 2012 Dec;50(12):3838-44. doi: 10.1128/JCM.01516-12. Epub 2012 Sep 19. J Clin Microbiol. 2012. PMID: 22993180 Free PMC article.

3

Complete Genome Characterization of Two Wild-Type Measles Viruses from Vietnamese Infants during the 2014 Outbreak.

Oude Munnink BB, Phan MV, Kellam P, Cotten M; VIZIONS Consortium. Oude Munnink BB, et al. Among authors: cotten m. Genome Announc. 2016 Apr 14;4(2):e00250-16. doi: 10.1128/genomeA.00250-16. Genome Announc. 2016. PMID: 27081130 Free PMC article.

4

Human Rhinovirus B and C Genomes from Rural Coastal Kenya.

Agoti CN, Kiyuka PK, Kamau E, Munywoki PK, Bett A, van der Hoek L, Kellam P, Nokes DJ, Cotten M. Agoti CN, et al. Among authors: cotten m. Genome Announc. 2016 Jul 28;4(4):e00751-16. doi: 10.1128/genomeA.00751-16. Genome Announc. 2016. PMID: 27469941 Free PMC article.

5

Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm.

Cotten M, Oude Munnink B, Canuti M, Deijs M, Watson SJ, Kellam P, van der Hoek L. Cotten M, et al. PLoS One. 2014 Apr 2;9(4):e93269. doi: 10.1371/journal.pone.0093269. eCollection 2014. PLoS One. 2014. PMID: 24695106 Free PMC article.

6

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting.

Cotten M, Petrova V, Phan MV, Rabaa MA, Watson SJ, Ong SH, Kellam P, Baker S. Cotten M, et al. J Virol. 2014 Oct;88(19):11056-69. doi: 10.1128/JVI.01333-14. Epub 2014 Jul 23. J Virol. 2014. PMID: 25056894 Free PMC article.

7

Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus.

Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. Cotten M, et al. Emerg Infect Dis. 2013 May;19(5):736-42B. doi: 10.3201/eid1905.130057. Emerg Infect Dis. 2013. PMID: 23693015 Free PMC article.

8

Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing.

Agoti CN, Otieno JR, Munywoki PK, Mwihuri AG, Cane PA, Nokes DJ, Kellam P, Cotten M. Agoti CN, et al. Among authors: cotten m. J Virol. 2015 Apr;89(7):3444-54. doi: 10.1128/JVI.03391-14. Epub 2015 Jan 21. J Virol. 2015. PMID: 25609811 Free PMC article.

9

Genome Sequences of a Novel Vietnamese Bat Bunyavirus.

Oude Munnink BB, Phan MV, van der Hoek L, Kellam P, Cotten M; VIZIONS Consortium. Oude Munnink BB, et al. Among authors: cotten m. Genome Announc. 2016 Dec 22;4(6):e01366-16. doi: 10.1128/genomeA.01366-16. Genome Announc. 2016. PMID: 28007850 Free PMC article.

10

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Tapinos A, Constantinides B, Phan MVT, Kouchaki S, Cotten M, Robertson DL. Tapinos A, et al. Among authors: cotten m. Viruses. 2019 Apr 26;11(5):394. doi: 10.3390/v11050394. Viruses. 2019. PMID: 31035503 Free PMC article.

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