Huson DH - Search Results

1

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R. Huson DH, et al. Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2. Microbiome. 2017. PMID: 28122610 Free PMC article.

2

MuLan-Methyl-multiple transformer-based language models for accurate DNA methylation prediction.

Zeng W, Gautam A, Huson DH. Zeng W, et al. Among authors: huson dh. Gigascience. 2022 Dec 28;12:giad054. doi: 10.1093/gigascience/giad054. Epub 2023 Jul 25. Gigascience. 2022. PMID: 37489753 Free PMC article.

3

Short clones or long clones? A simulation study on the use of paired reads in metagenomics.

Mitra S, Schubach M, Huson DH. Mitra S, et al. Among authors: huson dh. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S12. doi: 10.1186/1471-2105-11-S1-S12. BMC Bioinformatics. 2010. PMID: 20122183 Free PMC article.

4

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.

Mitra S, Rupek P, Richter DC, Urich T, Gilbert JA, Meyer F, Wilke A, Huson DH. Mitra S, et al. Among authors: huson dh. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S21. doi: 10.1186/1471-2105-12-S1-S21. BMC Bioinformatics. 2011. PMID: 21342551 Free PMC article.

5

Reference-guided assembly of four diverse Arabidopsis thaliana genomes.

Schneeberger K, Ossowski S, Ott F, Klein JD, Wang X, Lanz C, Smith LM, Cao J, Fitz J, Warthmann N, Henz SR, Huson DH, Weigel D. Schneeberger K, et al. Among authors: huson dh. Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10249-54. doi: 10.1073/pnas.1107739108. Epub 2011 Jun 6. Proc Natl Acad Sci U S A. 2011. PMID: 21646520 Free PMC article.

6

Introduction to the analysis of environmental sequences: metagenomics with MEGAN.

Huson DH, Mitra S. Huson DH, et al. Methods Mol Biol. 2012;856:415-29. doi: 10.1007/978-1-61779-585-5_17. Methods Mol Biol. 2012. PMID: 22399469

7

A poor man's BLASTX--high-throughput metagenomic protein database search using PAUDA.

Huson DH, Xie C. Huson DH, et al. Bioinformatics. 2014 Jan 1;30(1):38-9. doi: 10.1093/bioinformatics/btt254. Epub 2013 May 7. Bioinformatics. 2014. PMID: 23658416 Free PMC article.

8

Fast and sensitive protein alignment using DIAMOND.

Buchfink B, Xie C, Huson DH. Buchfink B, et al. Among authors: huson dh. Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17. Nat Methods. 2015. PMID: 25402007

9

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R. Huson DH, et al. PLoS Comput Biol. 2016 Jun 21;12(6):e1004957. doi: 10.1371/journal.pcbi.1004957. eCollection 2016 Jun. PLoS Comput Biol. 2016. PMID: 27327495 Free PMC article.

10

A simple statistical test of taxonomic or functional homogeneity using replicated microbiome sequencing samples.

Huson DH, Steel M, El-Hadidi M, Mitra S, Peter S, Willmann M. Huson DH, et al. J Biotechnol. 2017 May 20;250:45-50. doi: 10.1016/j.jbiotec.2016.10.020. Epub 2016 Oct 27. J Biotechnol. 2017. PMID: 27984120 Free article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

124 results

Search Page

Filters