Ma'ayan A - Search Results

1

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.

Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT. Shameer K, et al. Brief Bioinform. 2018 Jul 20;19(4):656-678. doi: 10.1093/bib/bbw136. Brief Bioinform. 2018. PMID: 28200013 Free PMC article.

2

KEA: kinase enrichment analysis.

Lachmann A, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2009 Mar 1;25(5):684-6. doi: 10.1093/bioinformatics/btp026. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176546 Free PMC article.

3

Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A. Lachmann A, et al. BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87. BMC Bioinformatics. 2010. PMID: 20152038 Free PMC article.

4

The characteristic direction: a geometrical approach to identify differentially expressed genes.

Clark NR, Hu KS, Feldmann AS, Kou Y, Chen EY, Duan Q, Ma'ayan A. Clark NR, et al. BMC Bioinformatics. 2014 Mar 21;15:79. doi: 10.1186/1471-2105-15-79. BMC Bioinformatics. 2014. PMID: 24650281 Free PMC article.

5

L1000CDS²: LINCS L1000 characteristic direction signatures search engine.

Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, Ma'ayan A. Duan Q, et al. NPJ Syst Biol Appl. 2016;2:16015-. doi: 10.1038/npjsba.2016.15. Epub 2016 Aug 4. NPJ Syst Biol Appl. 2016. PMID: 28413689 Free PMC article.

6

Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age.

Wang Z, Li L, Glicksberg BS, Israel A, Dudley JT, Ma'ayan A. Wang Z, et al. J Biomed Inform. 2017 Dec;76:59-68. doi: 10.1016/j.jbi.2017.11.003. Epub 2017 Nov 4. J Biomed Inform. 2017. PMID: 29113935 Free PMC article.

7

Cell-specific prediction and application of drug-induced gene expression profiles.

Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J. Hodos R, et al. Pac Symp Biocomput. 2018;23:32-43. Pac Symp Biocomput. 2018. PMID: 29218867 Free PMC article.

8

Network analysis of FDA approved drugs and their targets.

Ma'ayan A, Jenkins SL, Goldfarb J, Iyengar R. Ma'ayan A, et al. Mt Sinai J Med. 2007 Apr;74(1):27-32. doi: 10.1002/msj.20002. Mt Sinai J Med. 2007. PMID: 17516560 Free PMC article.

9

Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases.

Berger SI, Posner JM, Ma'ayan A. Berger SI, et al. BMC Bioinformatics. 2007 Oct 4;8:372. doi: 10.1186/1471-2105-8-372. BMC Bioinformatics. 2007. PMID: 17916244 Free PMC article.

10

Systems biology of kidney diseases.

He JC, Chuang PY, Ma'ayan A, Iyengar R. He JC, et al. Kidney Int. 2012 Jan;81(1):22-39. doi: 10.1038/ki.2011.314. Epub 2011 Aug 31. Kidney Int. 2012. PMID: 21881558 Free PMC article. Review.

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