Wang Z - Search Results

1

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.

Wang Z, Danziger SA, Heavner BD, Ma S, Smith JJ, Li S, Herricks T, Simeonidis E, Baliga NS, Aitchison JD, Price ND. Wang Z, et al. PLoS Comput Biol. 2017 May 17;13(5):e1005489. doi: 10.1371/journal.pcbi.1005489. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28520713 Free PMC article.

2

Systematic investigation of metabolic reprogramming in different cancers based on tissue-specific metabolic models.

Shen F, Li J, Zhu Y, Wang Z. Shen F, et al. Among authors: wang z. J Bioinform Comput Biol. 2016 Oct;14(5):1644001. doi: 10.1142/S0219720016440017. Epub 2016 Aug 29. J Bioinform Comput Biol. 2016. PMID: 27760488

3

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling.

Shen F, Sun R, Yao J, Li J, Liu Q, Price ND, Liu C, Wang Z. Shen F, et al. Among authors: wang z. PLoS Comput Biol. 2019 Mar 8;15(3):e1006835. doi: 10.1371/journal.pcbi.1006835. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30849073 Free PMC article.

4

Exploring mitochondrial evolution and metabolism organization principles by comparative analysis of metabolic networks.

Chang X, Wang Z, Hao P, Li YY, Li YX. Chang X, et al. Among authors: wang z. Genomics. 2010 Jun;95(6):339-44. doi: 10.1016/j.ygeno.2010.03.006. Epub 2010 Mar 15. Genomics. 2010. PMID: 20298776 Free article.

5

Systematic comparison of C3 and C4 plants based on metabolic network analysis.

Wang C, Guo L, Li Y, Wang Z. Wang C, et al. Among authors: wang z. BMC Syst Biol. 2012;6 Suppl 2(Suppl 2):S9. doi: 10.1186/1752-0509-6-S2-S9. Epub 2012 Dec 12. BMC Syst Biol. 2012. PMID: 23281598 Free PMC article.

6

Multi-scale modeling of Arabidopsis thaliana response to different CO2 conditions: From gene expression to metabolic flux.

Liu L, Shen F, Xin C, Wang Z. Liu L, et al. Among authors: wang z. J Integr Plant Biol. 2016 Jan;58(1):2-11. doi: 10.1111/jipb.12370. Epub 2015 Aug 24. J Integr Plant Biol. 2016. PMID: 26010949

7

CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.

Zheng G, Xu Y, Zhang X, Liu ZP, Wang Z, Chen L, Zhu XG. Zheng G, et al. Among authors: wang z. BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):535. doi: 10.1186/s12859-016-1324-y. BMC Bioinformatics. 2016. PMID: 28155637 Free PMC article.

8

Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development.

Shen F, Wu X, Shi L, Zhang H, Chen Y, Qi X, Wang Z, Li X. Shen F, et al. Among authors: wang z. BMC Syst Biol. 2018 Apr 24;12(Suppl 4):47. doi: 10.1186/s12918-018-0574-x. BMC Syst Biol. 2018. PMID: 29745852 Free PMC article.

9

Mechanistic Modeling of Gene Regulation and Metabolism Identifies Potential Targets for Hepatocellular Carcinoma.

Sun R, Xu Y, Zhang H, Yang Q, Wang K, Shi Y, Wang Z. Sun R, et al. Among authors: wang k, wang z. Front Genet. 2020 Dec 23;11:595242. doi: 10.3389/fgene.2020.595242. eCollection 2020. Front Genet. 2020. PMID: 33424926 Free PMC article.

10

Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.

Zhang X, Liu CG, Yang SH, Wang X, Bai FW, Wang Z. Zhang X, et al. Among authors: wang x, wang z. Brief Bioinform. 2022 May 13;23(3):bbac146. doi: 10.1093/bib/bbac146. Brief Bioinform. 2022. PMID: 35511110

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