Koelmel JP - Search Results

1

Corrigendum to "Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation" [Biochim. Biophys. Acta 1862(8) (2017) 766-770].

Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA. Koelmel JP, et al. Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Sep;1862(9):1024. doi: 10.1016/j.bbalip.2017.06.013. Epub 2017 Jun 27. Biochim Biophys Acta Mol Cell Biol Lipids. 2017. PMID: 28648965 No abstract available.

2

Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.

Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA. Koelmel JP, et al. Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Aug;1862(8):766-770. doi: 10.1016/j.bbalip.2017.02.016. Epub 2017 Mar 2. Biochim Biophys Acta Mol Cell Biol Lipids. 2017. PMID: 28263877 Free PMC article. Review. No abstract available.

3

LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics.

Ulmer CZ, Koelmel JP, Ragland JM, Garrett TJ, Bowden JA. Ulmer CZ, et al. Among authors: koelmel jp. J Am Soc Mass Spectrom. 2017 Mar;28(3):562-565. doi: 10.1007/s13361-016-1579-6. Epub 2017 Jan 10. J Am Soc Mass Spectrom. 2017. PMID: 28074328 Free PMC article.

4

Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation.

Koelmel JP, Kroeger NM, Gill EL, Ulmer CZ, Bowden JA, Patterson RE, Yost RA, Garrett TJ. Koelmel JP, et al. J Am Soc Mass Spectrom. 2017 May;28(5):908-917. doi: 10.1007/s13361-017-1608-0. Epub 2017 Mar 6. J Am Soc Mass Spectrom. 2017. PMID: 28265968 Free PMC article.

5

A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry.

Ulmer CZ, Patterson RE, Koelmel JP, Garrett TJ, Yost RA. Ulmer CZ, et al. Among authors: koelmel jp. Methods Mol Biol. 2017;1609:91-106. doi: 10.1007/978-1-4939-6996-8_10. Methods Mol Biol. 2017. PMID: 28660577 Free PMC article.

6

LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.

Koelmel JP, Kroeger NM, Ulmer CZ, Bowden JA, Patterson RE, Cochran JA, Beecher CWW, Garrett TJ, Yost RA. Koelmel JP, et al. BMC Bioinformatics. 2017 Jul 10;18(1):331. doi: 10.1186/s12859-017-1744-3. BMC Bioinformatics. 2017. PMID: 28693421 Free PMC article.

7

LipidQC: Method Validation Tool for Visual Comparison to SRM 1950 Using NIST Interlaboratory Comparison Exercise Lipid Consensus Mean Estimate Values.

Ulmer CZ, Ragland JM, Koelmel JP, Heckert A, Jones CM, Garrett TJ, Yost RA, Bowden JA. Ulmer CZ, et al. Among authors: koelmel jp. Anal Chem. 2017 Dec 19;89(24):13069-13073. doi: 10.1021/acs.analchem.7b04042. Epub 2017 Dec 1. Anal Chem. 2017. PMID: 29148710 Free PMC article.

8

Examining heat treatment for stabilization of the lipidome.

Koelmel JP, Jones CM, Ulmer CZ, Garrett TJ, Yost RA, Schock TB, Bowden JA. Koelmel JP, et al. Bioanalysis. 2018 Mar 1;10(5):291-305. doi: 10.4155/bio-2017-0209. Epub 2018 Feb 16. Bioanalysis. 2018. PMID: 29451398

9

NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives.

Bowden JA, Ulmer CZ, Jones CM, Koelmel JP, Yost RA. Bowden JA, et al. Among authors: koelmel jp. Metabolomics. 2018 Mar 20;14(5):53. doi: 10.1007/s11306-018-1340-1. Metabolomics. 2018. PMID: 30830346 Free PMC article.

10

Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values.

Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ. Koelmel JP, et al. BMC Bioinformatics. 2019 Apr 29;20(1):217. doi: 10.1186/s12859-019-2803-8. BMC Bioinformatics. 2019. PMID: 31035918 Free PMC article.

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