Shimamura T - Search Results

1

Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia.

Seki M, Kimura S, Isobe T, Yoshida K, Ueno H, Nakajima-Takagi Y, Wang C, Lin L, Kon A, Suzuki H, Shiozawa Y, Kataoka K, Fujii Y, Shiraishi Y, Chiba K, Tanaka H, Shimamura T, Masuda K, Kawamoto H, Ohki K, Kato M, Arakawa Y, Koh K, Hanada R, Moritake H, Akiyama M, Kobayashi R, Deguchi T, Hashii Y, Imamura T, Sato A, Kiyokawa N, Oka A, Hayashi Y, Takagi M, Manabe A, Ohara A, Horibe K, Sanada M, Iwama A, Mano H, Miyano S, Ogawa S, Takita J. Seki M, et al. Among authors: shimamura t. Nat Genet. 2017 Aug;49(8):1274-1281. doi: 10.1038/ng.3900. Epub 2017 Jul 3. Nat Genet. 2017. PMID: 28671687

2

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S. Shimamura T, et al. Genome Inform. 2007;19:142-53. Genome Inform. 2007. PMID: 18546512

3

Recursive regularization for inferring gene networks from time-course gene expression profiles.

Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S. Shimamura T, et al. BMC Syst Biol. 2009 Apr 22;3:41. doi: 10.1186/1752-0509-3-41. BMC Syst Biol. 2009. PMID: 19386091 Free PMC article.

4

Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data.

Kojima K, Fujita A, Shimamura T, Imoto S, Miyano S. Kojima K, et al. Among authors: shimamura t. Genome Inform. 2008;20:37-51. Genome Inform. 2008. PMID: 19425121 Free article.

5

A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.

Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S. Hatanaka Y, et al. Among authors: shimamura t. Genome Inform. 2008;20:212-21. Genome Inform. 2008. PMID: 19425135 Free article.

6

Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.

Shimamura T, Imoto S, Yamaguchi R, Nagasaki M, Miyano S. Shimamura T, et al. Bioinformatics. 2010 Apr 15;26(8):1064-72. doi: 10.1093/bioinformatics/btq080. Epub 2010 Mar 1. Bioinformatics. 2010. PMID: 20197286

7

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S. Niida A, et al. Among authors: shimamura t. Bioinformatics. 2010 Dec 15;26(24):3090-7. doi: 10.1093/bioinformatics/btq592. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959379

8

A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition.

Shimamura T, Imoto S, Shimada Y, Hosono Y, Niida A, Nagasaki M, Yamaguchi R, Takahashi T, Miyano S. Shimamura T, et al. PLoS One. 2011;6(6):e20804. doi: 10.1371/journal.pone.0020804. Epub 2011 Jun 7. PLoS One. 2011. PMID: 21687740 Free PMC article.

9

Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR.

Fujita A, Nagasaki M, Imoto S, Saito A, Ikeda E, Shimamura T, Yamaguchi R, Hayashizaki Y, Miyano S. Fujita A, et al. Among authors: shimamura t. Genome Inform. 2010;24:56-68. Genome Inform. 2010. PMID: 22081589 Free article.

10

Sign: large-scale gene network estimation environment for high performance computing.

Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S. Tamada Y, et al. Among authors: shimamura t. Genome Inform. 2011;25(1):40-52. Genome Inform. 2011. PMID: 22230938 Free article.

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