Baker D - Search Results

1

Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.

Schoebel S, Mi W, Stein A, Ovchinnikov S, Pavlovicz R, DiMaio F, Baker D, Chambers MG, Su H, Li D, Rapoport TA, Liao M. Schoebel S, et al. Among authors: baker d. Nature. 2017 Aug 17;548(7667):352-355. doi: 10.1038/nature23314. Epub 2017 Jul 6. Nature. 2017. PMID: 28682307 Free PMC article.

2

A surprising simplicity to protein folding.

Baker D. Baker D. Nature. 2000 May 4;405(6782):39-42. doi: 10.1038/35011000. Nature. 2000. PMID: 10811210

3

High-resolution structure prediction and the crystallographic phase problem.

Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D. Qian B, et al. Among authors: baker d. Nature. 2007 Nov 8;450(7167):259-64. doi: 10.1038/nature06249. Epub 2007 Oct 14. Nature. 2007. PMID: 17934447 Free PMC article.

4

Refinement of protein structures into low-resolution density maps using rosetta.

DiMaio F, Tyka MD, Baker ML, Chiu W, Baker D. DiMaio F, et al. Among authors: baker d, baker ml. J Mol Biol. 2009 Sep 11;392(1):181-90. doi: 10.1016/j.jmb.2009.07.008. Epub 2009 Jul 8. J Mol Biol. 2009. PMID: 19596339 Free PMC article.

5

Structure prediction for CASP8 with all-atom refinement using Rosetta.

Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Raman S, et al. Among authors: baker d. Proteins. 2009;77 Suppl 9(0 9):89-99. doi: 10.1002/prot.22540. Proteins. 2009. PMID: 19701941 Free PMC article.

6

Predicting protein structures with a multiplayer online game.

Cooper S, Khatib F, Treuille A, Barbero J, Lee J, Beenen M, Leaver-Fay A, Baker D, Popović Z, Players F. Cooper S, et al. Among authors: baker d. Nature. 2010 Aug 5;466(7307):756-60. doi: 10.1038/nature09304. Nature. 2010. PMID: 20686574 Free PMC article.

7

Alternate states of proteins revealed by detailed energy landscape mapping.

Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Tyka MD, et al. Among authors: baker d. J Mol Biol. 2011 Jan 14;405(2):607-18. doi: 10.1016/j.jmb.2010.11.008. Epub 2010 Nov 10. J Mol Biol. 2011. PMID: 21073878 Free PMC article.

8

Crystal structure of XMRV protease differs from the structures of other retropepsins.

Li M, Dimaio F, Zhou D, Gustchina A, Lubkowski J, Dauter Z, Baker D, Wlodawer A. Li M, et al. Among authors: baker d. Nat Struct Mol Biol. 2011 Feb;18(2):227-9. doi: 10.1038/nsmb.1964. Epub 2011 Jan 23. Nat Struct Mol Biol. 2011. PMID: 21258323 Free PMC article.

9

Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.

Sgourakis NG, Lange OF, DiMaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D. Sgourakis NG, et al. Among authors: baker d. J Am Chem Soc. 2011 Apr 27;133(16):6288-98. doi: 10.1021/ja111318m. Epub 2011 Apr 5. J Am Chem Soc. 2011. PMID: 21466200 Free PMC article.

10

Improved molecular replacement by density- and energy-guided protein structure optimization.

DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D. DiMaio F, et al. Among authors: baker d. Nature. 2011 May 26;473(7348):540-3. doi: 10.1038/nature09964. Epub 2011 May 1. Nature. 2011. PMID: 21532589 Free PMC article.

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