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Page 1
Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: chue hong n. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
An open science peer review oath.
Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop. Aleksic J, et al. Among authors: chue hong n. F1000Res. 2014 Nov 12;3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014. F1000Res. 2014. PMID: 25653839 Free PMC article.
Top 10 metrics for life science software good practices.
Artaza H, Chue Hong N, Corpas M, Corpuz A, Hooft R, Jimenez RC, Leskošek B, Olivier BG, Stourac J, Svobodová Vařeková R, Van Parys T, Vaughan D. Artaza H, et al. Among authors: chue hong n. F1000Res. 2016 Aug 16;5:ELIXIR-2000. doi: 10.12688/f1000research.9206.1. eCollection 2016. F1000Res. 2016. PMID: 27635232 Free PMC article.
Recognizing the value of software: a software citation guide.
Katz DS, Chue Hong NP, Clark T, Muench A, Stall S, Bouquin D, Cannon M, Edmunds S, Faez T, Feeney P, Fenner M, Friedman M, Grenier G, Harrison M, Heber J, Leary A, MacCallum C, Murray H, Pastrana E, Perry K, Schuster D, Stockhause M, Yeston J. Katz DS, et al. Among authors: chue hong np. F1000Res. 2020 Oct 19;9:1257. doi: 10.12688/f1000research.26932.2. eCollection 2020. F1000Res. 2020. PMID: 33500780 Free PMC article.
Introducing the FAIR Principles for research software.
Barker M, Chue Hong NP, Katz DS, Lamprecht AL, Martinez-Ortiz C, Psomopoulos F, Harrow J, Castro LJ, Gruenpeter M, Martinez PA, Honeyman T. Barker M, et al. Among authors: chue hong np. Sci Data. 2022 Oct 14;9(1):622. doi: 10.1038/s41597-022-01710-x. Sci Data. 2022. PMID: 36241754 Free PMC article.
Journal Production Guidance for Software and Data Citations.
Stall S, Bilder G, Cannon M, Chue Hong N, Edmunds S, Erdmann CC, Evans M, Farmer R, Feeney P, Friedman M, Giampoala M, Hanson RB, Harrison M, Karaiskos D, Katz DS, Letizia V, Lizzi V, MacCallum C, Muench A, Perry K, Ratner H, Schindler U, Sedora B, Stockhause M, Townsend R, Yeston J, Clark T. Stall S, et al. Among authors: chue hong n. Sci Data. 2023 Sep 26;10(1):656. doi: 10.1038/s41597-023-02491-7. Sci Data. 2023. PMID: 37752153 Free PMC article.
A roadmap for caGrid, an enterprise Grid architecture for biomedical research.
Saltz J, Hastings S, Langella S, Oster S, Kurc T, Payne P, Ferreira R, Plale B, Goble C, Ervin D, Sharma A, Pan T, Permar J, Brezany P, Siebenlist F, Madduri R, Foster I, Shanbhag K, Mead C, Chue Hong N. Saltz J, et al. Among authors: chue hong n. Stud Health Technol Inform. 2008;138:224-37. Stud Health Technol Inform. 2008. PMID: 18560123 Free PMC article.
Best practices for scientific computing.
Wilson G, Aruliah DA, Brown CT, Chue Hong NP, Davis M, Guy RT, Haddock SH, Huff KD, Mitchell IM, Plumbley MD, Waugh B, White EP, Wilson P. Wilson G, et al. Among authors: chue hong np. PLoS Biol. 2014 Jan;12(1):e1001745. doi: 10.1371/journal.pbio.1001745. Epub 2014 Jan 7. PLoS Biol. 2014. PMID: 24415924 Free PMC article.
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