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Page 1
Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: stodden v. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
Reproducibility of research: Issues and proposed remedies.
Allison DB, Shiffrin RM, Stodden V. Allison DB, et al. Among authors: stodden v. Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2561-2562. doi: 10.1073/pnas.1802324115. Epub 2018 Mar 12. Proc Natl Acad Sci U S A. 2018. PMID: 29531033 Free PMC article. No abstract available.
Enhancing reproducibility for computational methods.
Stodden V, McNutt M, Bailey DH, Deelman E, Gil Y, Hanson B, Heroux MA, Ioannidis JP, Taufer M. Stodden V, et al. Science. 2016 Dec 9;354(6317):1240-1241. doi: 10.1126/science.aah6168. Science. 2016. PMID: 27940837 No abstract available.
Reproducibility and replicability of rodent phenotyping in preclinical studies.
Kafkafi N, Agassi J, Chesler EJ, Crabbe JC, Crusio WE, Eilam D, Gerlai R, Golani I, Gomez-Marin A, Heller R, Iraqi F, Jaljuli I, Karp NA, Morgan H, Nicholson G, Pfaff DW, Richter SH, Stark PB, Stiedl O, Stodden V, Tarantino LM, Tucci V, Valdar W, Williams RW, Würbel H, Benjamini Y. Kafkafi N, et al. Among authors: stodden v. Neurosci Biobehav Rev. 2018 Apr;87:218-232. doi: 10.1016/j.neubiorev.2018.01.003. Epub 2018 Jan 31. Neurosci Biobehav Rev. 2018. PMID: 29357292 Free PMC article. Review.
SCIENTIFIC INTEGRITY. Self-correction in science at work.
Alberts B, Cicerone RJ, Fienberg SE, Kamb A, McNutt M, Nerem RM, Schekman R, Shiffrin R, Stodden V, Suresh S, Zuber MT, Pope BK, Jamieson KH. Alberts B, et al. Among authors: stodden v. Science. 2015 Jun 26;348(6242):1420-2. doi: 10.1126/science.aab3847. Science. 2015. PMID: 26113701 No abstract available.
Virtual Northern analysis of the human genome.
Hurowitz EH, Drori I, Stodden VC, Donoho DL, Brown PO. Hurowitz EH, et al. PLoS One. 2007 May 23;2(5):e460. doi: 10.1371/journal.pone.0000460. PLoS One. 2007. PMID: 17520019 Free PMC article.
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