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Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.
Monti R, Barozzi I, Osterwalder M, Lee E, Kato M, Garvin TH, Plajzer-Frick I, Pickle CS, Akiyama JA, Afzal V, Beerenwinkel N, Dickel DE, Visel A, Pennacchio LA. Monti R, et al. Among authors: pennacchio la. PLoS Comput Biol. 2017 Aug 21;13(8):e1005720. doi: 10.1371/journal.pcbi.1005720. eCollection 2017 Aug. PLoS Comput Biol. 2017. PMID: 28827824 Free PMC article.
In vivo characterization of a vertebrate ultraconserved enhancer.
Poulin F, Nobrega MA, Plajzer-Frick I, Holt A, Afzal V, Rubin EM, Pennacchio LA. Poulin F, et al. Among authors: pennacchio la. Genomics. 2005 Jun;85(6):774-81. doi: 10.1016/j.ygeno.2005.03.003. Epub 2005 Apr 15. Genomics. 2005. PMID: 15885503
In vivo enhancer analysis of human conserved non-coding sequences.
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. Pennacchio LA, et al. Nature. 2006 Nov 23;444(7118):499-502. doi: 10.1038/nature05295. Epub 2006 Nov 5. Nature. 2006. PMID: 17086198 Free article.
VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Visel A, Minovitsky S, Dubchak I, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92. doi: 10.1093/nar/gkl822. Epub 2006 Nov 27. Nucleic Acids Res. 2007. PMID: 17130149 Free PMC article.
Predicting tissue-specific enhancers in the human genome.
Pennacchio LA, Loots GG, Nobrega MA, Ovcharenko I. Pennacchio LA, et al. Genome Res. 2007 Feb;17(2):201-11. doi: 10.1101/gr.5972507. Epub 2007 Jan 8. Genome Res. 2007. PMID: 17210927 Free PMC article.
Enhancer identification through comparative genomics.
Visel A, Bristow J, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Semin Cell Dev Biol. 2007 Feb;18(1):140-52. doi: 10.1016/j.semcdb.2006.12.014. Epub 2007 Jan 5. Semin Cell Dev Biol. 2007. PMID: 17276707 Free PMC article. Review.
Deletion of ultraconserved elements yields viable mice.
Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM. Ahituv N, et al. Among authors: pennacchio la. PLoS Biol. 2007 Sep;5(9):e234. doi: 10.1371/journal.pbio.0050234. PLoS Biol. 2007. PMID: 17803355 Free PMC article.
198 results