Rozowsky J - Search Results

1

Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.

Kaczor-Urbanowicz KE, Kim Y, Li F, Galeev T, Kitchen RR, Gerstein M, Koyano K, Jeong SH, Wang X, Elashoff D, Kang SY, Kim SM, Kim K, Kim S, Chia D, Xiao X, Rozowsky J, Wong DTW. Kaczor-Urbanowicz KE, et al. Among authors: rozowsky j. Bioinformatics. 2018 Jan 1;34(1):1-8. doi: 10.1093/bioinformatics/btx504. Bioinformatics. 2018. PMID: 28961734 Free PMC article.

2

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M. Zhang ZD, et al. Among authors: rozowsky j. Genome Biol. 2007;8(5):R81. doi: 10.1186/gb-2007-8-5-r81. Genome Biol. 2007. PMID: 17501994 Free PMC article.

3

Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms.

Borneman AR, Zhang ZD, Rozowsky J, Seringhaus MR, Gerstein M, Snyder M. Borneman AR, et al. Among authors: rozowsky j. Funct Integr Genomics. 2007 Oct;7(4):335-45. doi: 10.1007/s10142-007-0054-7. Epub 2007 Jul 19. Funct Integr Genomics. 2007. PMID: 17638031

4

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M. Borneman AR, et al. Among authors: rozowsky j. Science. 2007 Aug 10;317(5839):815-9. doi: 10.1126/science.1140748. Science. 2007. PMID: 17690298

5

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.

Wu JQ, Du J, Rozowsky J, Zhang Z, Urban AE, Euskirchen G, Weissman S, Gerstein M, Snyder M. Wu JQ, et al. Among authors: rozowsky j. Genome Biol. 2008 Jan 3;9(1):R3. doi: 10.1186/gb-2008-9-1-r3. Genome Biol. 2008. PMID: 18173853 Free PMC article.

6

Modeling ChIP sequencing in silico with applications.

Zhang ZD, Rozowsky J, Snyder M, Chang J, Gerstein M. Zhang ZD, et al. Among authors: rozowsky j. PLoS Comput Biol. 2008 Aug 22;4(8):e1000158. doi: 10.1371/journal.pcbi.1000158. PLoS Comput Biol. 2008. PMID: 18725927 Free PMC article.

7

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.

Seringhaus M, Rozowsky J, Royce T, Nagalakshmi U, Jee J, Snyder M, Gerstein M. Seringhaus M, et al. Among authors: rozowsky j. BMC Genomics. 2008 Dec 31;9:635. doi: 10.1186/1471-2164-9-635. BMC Genomics. 2008. PMID: 19117516 Free PMC article.

8

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.

Rozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein MB. Rozowsky J, et al. Nat Biotechnol. 2009 Jan;27(1):66-75. doi: 10.1038/nbt.1518. Epub 2009 Jan 4. Nat Biotechnol. 2009. PMID: 19122651 Free PMC article.

9

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M. Lefrançois P, et al. Among authors: rozowsky j. BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37. BMC Genomics. 2009. PMID: 19159457 Free PMC article.

10

An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping.

Sasidharan R, Agarwal A, Rozowsky J, Gerstein M. Sasidharan R, et al. Among authors: rozowsky j. BMC Res Notes. 2009 Jul 24;2:150. doi: 10.1186/1756-0500-2-150. BMC Res Notes. 2009. PMID: 19630981 Free PMC article.

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