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Bambus 2: scaffolding metagenomes.
Koren S, Treangen TJ, Pop M. Koren S, et al. Among authors: pop m. Bioinformatics. 2011 Nov 1;27(21):2964-71. doi: 10.1093/bioinformatics/btr520. Epub 2011 Sep 16. Bioinformatics. 2011. PMID: 21926123 Free PMC article.
Next generation sequence assembly with AMOS.
Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Treangen TJ, et al. Among authors: pop m. Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit 11.8. doi: 10.1002/0471250953.bi1108s33. Curr Protoc Bioinformatics. 2011. PMID: 21400694 Free PMC article.
Metagenomic Assembly: Overview, Challenges and Applications.
Ghurye JS, Cepeda-Espinoza V, Pop M. Ghurye JS, et al. Among authors: pop m. Yale J Biol Med. 2016 Sep 30;89(3):353-362. eCollection 2016 Sep. Yale J Biol Med. 2016. PMID: 27698619 Free PMC article. Review.
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
Ghurye J, Rhie A, Walenz BP, Schmitt A, Selvaraj S, Pop M, Phillippy AM, Koren S. Ghurye J, et al. Among authors: pop m. PLoS Comput Biol. 2019 Aug 21;15(8):e1007273. doi: 10.1371/journal.pcbi.1007273. eCollection 2019 Aug. PLoS Comput Biol. 2019. PMID: 31433799 Free PMC article.
472 results