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Scipion web tools: Easy to use cryo-EM image processing over the web.
Conesa Mingo P, Gutierrez J, Quintana A, de la Rosa Trevín JM, Zaldívar-Peraza A, Cuenca Alba J, Kazemi M, Vargas J, Del Cano L, Segura J, Sorzano COS, Carazo JM. Conesa Mingo P, et al. Among authors: cuenca alba j. Protein Sci. 2018 Jan;27(1):269-275. doi: 10.1002/pro.3315. Epub 2017 Nov 6. Protein Sci. 2018. PMID: 28971542 Free PMC article.
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.
de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano CO, Carazo JM. de la Rosa-Trevín JM, et al. Among authors: cuenca alba j. J Struct Biol. 2016 Jul;195(1):93-9. doi: 10.1016/j.jsb.2016.04.010. Epub 2016 Apr 20. J Struct Biol. 2016. PMID: 27108186
Image formation in cellular X-ray microscopy.
Oton J, Sorzano CO, Pereiro E, Cuenca-Alba J, Navarro R, Carazo JM, Marabini R. Oton J, et al. Among authors: cuenca alba j. J Struct Biol. 2012 Apr;178(1):29-37. doi: 10.1016/j.jsb.2012.01.006. Epub 2012 Feb 15. J Struct Biol. 2012. PMID: 22343468
Engene: the processing and exploratory analysis of gene expression data.
García de la Nava J, Santaella DF, Cuenca Alba J, María Carazo J, Trelles O, Pascual-Montano A. García de la Nava J, et al. Among authors: cuenca alba j. Bioinformatics. 2003 Mar 22;19(5):657-8. doi: 10.1093/bioinformatics/btg028. Bioinformatics. 2003. PMID: 12651727