Maragkakis M - Search Results

1

cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.

Alexiou P, Maragkakis M, Mourelatos Z, Vourekas A. Alexiou P, et al. Among authors: maragkakis m. Methods Mol Biol. 2018;1680:87-100. doi: 10.1007/978-1-4939-7339-2_6. Methods Mol Biol. 2018. PMID: 29030843

2

DIANA-microT web server: elucidating microRNA functions through target prediction.

Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. Maragkakis M, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W273-6. doi: 10.1093/nar/gkp292. Epub 2009 Apr 30. Nucleic Acids Res. 2009. PMID: 19406924 Free PMC article.

3

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG. Papadopoulos GL, et al. Among authors: maragkakis m. Bioinformatics. 2009 Aug 1;25(15):1991-3. doi: 10.1093/bioinformatics/btp299. Epub 2009 May 12. Bioinformatics. 2009. PMID: 19435746

4

Accurate microRNA target prediction correlates with protein repression levels.

Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. Maragkakis M, et al. BMC Bioinformatics. 2009 Sep 18;10:295. doi: 10.1186/1471-2105-10-295. BMC Bioinformatics. 2009. PMID: 19765283 Free PMC article.

5

Lost in translation: an assessment and perspective for computational microRNA target identification.

Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG. Alexiou P, et al. Among authors: maragkakis m. Bioinformatics. 2009 Dec 1;25(23):3049-55. doi: 10.1093/bioinformatics/btp565. Epub 2009 Sep 29. Bioinformatics. 2009. PMID: 19789267 Review.

6

The DIANA-mirExTra web server: from gene expression data to microRNA function.

Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG. Alexiou P, et al. Among authors: maragkakis m. PLoS One. 2010 Feb 11;5(2):e9171. doi: 10.1371/journal.pone.0009171. PLoS One. 2010. PMID: 20161787 Free PMC article.

7

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.

Maragkakis M, Vergoulis T, Alexiou P, Reczko M, Plomaritou K, Gousis M, Kourtis K, Koziris N, Dalamagas T, Hatzigeorgiou AG. Maragkakis M, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W145-8. doi: 10.1093/nar/gkr294. Epub 2011 May 6. Nucleic Acids Res. 2011. PMID: 21551220 Free PMC article.

8

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.

Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG. Vergoulis T, et al. Among authors: maragkakis m. Nucleic Acids Res. 2012 Jan;40(Database issue):D222-9. doi: 10.1093/nar/gkr1161. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135297 Free PMC article.

9

Functional microRNA targets in protein coding sequences.

Reczko M, Maragkakis M, Alexiou P, Grosse I, Hatzigeorgiou AG. Reczko M, et al. Among authors: maragkakis m. Bioinformatics. 2012 Mar 15;28(6):771-6. doi: 10.1093/bioinformatics/bts043. Epub 2012 Jan 27. Bioinformatics. 2012. PMID: 22285563

10

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data.

Reczko M, Maragkakis M, Alexiou P, Papadopoulos GL, Hatzigeorgiou AG. Reczko M, et al. Among authors: maragkakis m. Front Genet. 2012 Jan 18;2:103. doi: 10.3389/fgene.2011.00103. eCollection 2011. Front Genet. 2012. PMID: 22303397 Free PMC article.

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